JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COPZ2_chr17_48021167_48042797	0/0	t0002	282	99	23	17	37	8	14	copy fasta	COPZ2	chr17	48021167	48042797
COPZ2_chr17_48021167_48042797	0/0	t0003	282	1	0	0	1	0	0	copy fasta	COPZ2	chr17	48021167	48042797
COQ10A_chr12_56261942_56275966	1/1	t0001	827	310	84	68	111	9	36	copy fasta	COQ10A	chr12	56261942	56275966
COQ10A_chr12_56261942_56275966	0/0	t0002	827	17	0	4	11	2	0	copy fasta	COQ10A	chr12	56261942	56275966
COQ10A_chr12_56261942_56275966	0/0	t0003	827	2	2	0	0	0	0	copy fasta	COQ10A	chr12	56261942	56275966
COQ10A_chr12_56261942_56275966	0/0	t0004	827	2	0	1	0	1	0	copy fasta	COQ10A	chr12	56261942	56275966
COQ10A_chr12_56261942_56275966	0/0	t0005	827	1	0	1	0	0	0	copy fasta	COQ10A	chr12	56261942	56275966
COQ10B_chr2_197448552_197480310	1/0	t0001	1396	294	55	65	130	9	34	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/1	t0002	1397	35	5	10	16	2	1	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0003	1397	27	23	1	2	0	1	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0004	1398	23	0	0	20	1	2	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0005	1396	3	3	0	0	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0006	1396	2	0	0	0	2	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0007	1396	2	0	0	2	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0008	1396	1	0	0	1	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0009	1396	1	0	0	1	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0010	1397	1	0	0	1	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ10B_chr2_197448552_197480310	0/0	t0011	1396	1	0	0	1	0	0	copy fasta	COQ10B	chr2	197448552	197480310
COQ2_chr4_83258824_83289798	1/1	t0001	410	332	93	63	131	10	33	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	t0002	410	5	0	4	0	0	1	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	t0003	410	2	2	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	t0004	410	2	0	2	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	t0005	410	1	0	1	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	t0006	410	1	0	0	1	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ2_chr4_83258824_83289798	0/0	t0007	410	1	1	0	0	0	0	copy fasta	COQ2	chr4	83258824	83289798
COQ3_chr6_99364401_99399195	0/1	t0001	217	236	50	53	90	8	34	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	t0002	217	115	12	27	64	4	8	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	1/0	t0003	216	74	26	8	31	6	2	copy fasta	COQ3	chr6	99364401	99399195
COQ3_chr6_99364401_99399195	0/0	t0004	216	9	0	0	9	0	0	copy fasta	COQ3	chr6	99364401	99399195
COQ4_chr9_128317839_128339072	1/1	t0001	448	371	82	50	177	16	44	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	t0002	448	1	0	0	1	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	t0003	448	1	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ4_chr9_128317839_128339072	0/0	t0004	448	1	1	0	0	0	0	copy fasta	COQ4	chr9	128317839	128339072
COQ5_chr12_120498279_120534158	1/1	t0001	523	266	91	47	89	13	24	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	t0002	523	107	6	20	67	1	13	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	t0003	523	10	0	2	1	2	5	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	t0004	523	2	0	0	2	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	t0005	523	1	1	0	0	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	t0006	523	1	0	1	0	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ5_chr12_120498279_120534158	0/0	t0007	523	1	0	0	1	0	0	copy fasta	COQ5	chr12	120498279	120534158
COQ6_chr14_73945302_73968670	1/1	t0001	703	337	62	63	160	15	35	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	t0002	703	92	15	4	61	1	11	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	t0003	703	14	11	3	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	t0004	703	7	6	1	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	t0005	703	4	1	3	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	t0006	703	1	1	0	0	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ6_chr14_73945302_73968670	0/0	t0007	703	1	0	0	1	0	0	copy fasta	COQ6	chr14	73945302	73968670
COQ7_chr16_19062614_19085095	1/0	t0001	1989	199	35	32	99	6	26	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/1	t0002	1989	67	11	17	30	4	4	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0003	1990	30	11	5	0	0	14	copy fasta	COQ7	chr16	19062614	19085095