JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COQ7_chr16_19062614_19085095	0/0	t0004	1989	29	5	4	16	0	4	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0005	1989	6	6	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0006	1989	6	6	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0007	1989	5	0	0	5	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0008	1989	4	4	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0009	1989	4	3	0	1	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0010	1989	3	3	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0011	1989	3	0	0	3	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0012	1989	3	3	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0013	1990	3	2	1	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0014	1989	2	2	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0015	1989	1	0	0	1	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0016	1989	1	0	0	1	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0017	1989	1	0	0	1	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0018	1989	1	1	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0019	1990	1	1	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0020	1990	1	1	0	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0021	1990	1	0	0	1	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ7_chr16_19062614_19085095	0/0	t0022	1990	1	0	1	0	0	0	copy fasta	COQ7	chr16	19062614	19085095
COQ8A_chr1_226935294_226992544	1/1	t0001	923	138	28	29	57	1	21	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0002	923	97	29	12	41	6	9	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0003	924	86	23	23	18	9	13	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0004	923	70	4	13	49	2	2	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0005	923	7	0	0	6	0	1	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0006	923	4	3	1	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0007	923	3	2	1	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0008	923	3	3	0	0	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0009	923	2	0	1	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0010	923	1	0	0	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8A_chr1_226935294_226992544	0/0	t0011	923	1	0	0	1	0	0	copy fasta	COQ8A	chr1	226935294	226992544
COQ8B_chr19_40686530_40721886	1/1	t0001	809	388	83	67	179	16	41	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	t0002	809	7	0	7	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	t0003	809	6	6	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	t0004	809	5	5	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	t0005	809	1	0	0	0	0	1	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	t0006	809	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	t0007	809	1	1	0	0	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ8B_chr19_40686530_40721886	0/0	t0008	809	1	0	0	1	0	0	copy fasta	COQ8B	chr19	40686530	40721886
COQ9_chr16_57442479_57466270	0/1	t0001	674	358	62	62	183	11	39	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	t0002	674	33	22	3	2	3	3	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	t0003	674	5	5	0	0	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	1/0	t0004	674	2	0	1	0	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	t0005	674	2	0	0	0	0	2	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	t0006	674	1	0	0	1	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	t0007	674	1	0	0	1	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	t0008	674	1	0	0	1	0	0	copy fasta	COQ9	chr16	57442479	57466270
COQ9_chr16_57442479_57466270	0/0	t0009	674	1	1	0	0	0	0	copy fasta	COQ9	chr16	57442479	57466270
CORIN_chr4_47589001_47843067	0/0	t0001	1839	93	48	19	17	4	5	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	1/0	t0002	1839	71	20	14	16	4	16	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/1	t0003	1839	47	6	6	32	0	2	copy fasta	CORIN	chr4	47589001	47843067