JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CORIN_chr4_47589001_47843067	0/0	t0004	1839	37	6	4	23	2	2	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0005	1839	5	0	3	0	2	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0006	1839	2	2	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0007	1839	2	2	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0008	1839	2	2	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0009	1839	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0010	1839	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0011	1839	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0012	1839	1	0	0	0	0	1	copy fasta	CORIN	chr4	47589001	47843067
CORIN_chr4_47589001_47843067	0/0	t0013	1839	1	1	0	0	0	0	copy fasta	CORIN	chr4	47589001	47843067
CORO1A_chr16_30178602_30194076	1/1	t0001	237	330	80	56	144	14	34	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	t0002	237	11	1	10	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1A_chr16_30178602_30194076	0/0	t0003	237	1	1	0	0	0	0	copy fasta	CORO1A	chr16	30178602	30194076
CORO1B_chr11_67430510_67448476	1/1	t0001	2942	118	11	18	55	6	26	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0002	2942	69	18	8	41	1	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0003	2942	45	9	15	12	4	5	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0004	2941	44	43	1	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0005	2942	15	0	0	15	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0006	2942	14	0	14	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0007	2942	6	0	0	6	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0008	2942	6	6	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0009	2942	5	1	4	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0010	2942	5	0	1	3	0	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0011	2942	3	0	0	3	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0012	2942	3	0	0	3	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0013	2942	2	0	0	0	1	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0014	2942	2	2	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0015	2942	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0016	2942	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0017	2942	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0018	2942	1	0	1	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0019	2942	1	0	0	0	0	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0020	2942	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0021	2942	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0022	2941	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0023	2942	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0024	2942	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0025	2942	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0026	2942	1	0	0	0	1	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0027	2942	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0028	2942	1	1	0	0	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0029	2942	1	0	0	0	1	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0030	2942	1	0	0	0	0	1	copy fasta	CORO1B	chr11	67430510	67448476
CORO1B_chr11_67430510_67448476	0/0	t0031	2942	1	0	0	1	0	0	copy fasta	CORO1B	chr11	67430510	67448476
CORO1C_chr12_108640109_108736518	0/1	t0001	2389	178	30	34	88	2	23	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0002	2388	61	0	6	49	3	3	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	1/0	t0003	2390	49	23	11	0	6	8	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0004	2390	11	10	1	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0005	2387	5	5	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0006	2390	4	1	0	2	0	1	copy fasta	CORO1C	chr12	108640109	108736518