JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CORO1C_chr12_108640109_108736518	0/0	t0007	2389	3	2	0	0	0	1	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0008	2391	2	0	1	0	1	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0009	2389	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0010	2389	1	0	0	0	0	1	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0011	2389	1	0	0	0	0	1	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0012	2388	1	0	0	0	1	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0013	2389	1	0	0	0	1	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0014	2389	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0015	2388	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0016	2390	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0017	2390	1	0	1	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0018	2390	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0019	2377	1	0	0	1	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0020	2390	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO1C_chr12_108640109_108736518	0/0	t0021	2388	1	1	0	0	0	0	copy fasta	CORO1C	chr12	108640109	108736518
CORO2A_chr9_98115975_98197637	0/0	t0001	3878	113	9	21	67	5	11	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0002	3879	47	4	9	24	2	8	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0003	3879	35	31	3	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0004	3880	26	9	1	8	1	7	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	1/1	t0005	3879	22	0	9	2	2	7	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0006	3878	17	0	2	15	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0007	3879	9	0	4	3	0	2	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0008	3880	6	6	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0009	3879	6	4	2	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0010	3879	5	0	0	5	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0011	3880	4	4	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0012	3878	3	0	2	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0013	3881	3	3	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0014	3880	3	0	1	2	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0015	3879	3	0	0	3	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0016	3880	2	0	2	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0017	3878	2	0	0	0	0	2	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0018	3879	2	0	0	2	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0019	3879	2	2	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0020	3880	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0021	3879	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0022	3878	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0023	3878	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0024	3879	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0025	3877	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0026	3878	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0027	3880	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0028	3880	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0029	3880	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0030	3880	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0031	3880	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0032	3880	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0033	3880	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0034	3880	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0035	3879	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637