JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CORO2A_chr9_98115975_98197637	0/0	t0036	3879	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0037	3880	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0038	3878	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0039	3879	1	0	0	0	0	1	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0040	3879	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0041	3878	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0042	3878	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0043	3879	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0044	3879	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0045	3879	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0046	3879	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0047	3878	1	1	0	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0048	3879	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0049	3879	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0050	3879	1	0	1	0	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2A_chr9_98115975_98197637	0/0	t0051	3879	1	0	0	1	0	0	copy fasta	CORO2A	chr9	98115975	98197637
CORO2B_chr15_68573993_68732806	0/0	t0001	2103	76	10	28	18	2	18	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0002	2103	41	12	8	12	3	6	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/1	t0003	2103	39	1	10	20	3	4	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	1/0	t0004	2103	28	10	0	15	0	2	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0005	2103	20	15	1	1	1	2	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0006	2103	19	15	3	0	0	1	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0007	2103	6	2	0	2	1	1	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0008	2103	3	3	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0009	2103	3	3	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0010	2107	2	2	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0011	2103	2	2	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0012	2103	2	2	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0013	2107	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0014	2107	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0015	2103	1	0	0	1	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0016	2107	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0017	2107	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0018	2107	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0019	2084	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0020	2084	1	0	0	0	0	1	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0021	2103	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0022	2103	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0023	2103	1	0	0	1	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0024	2103	1	0	0	1	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0025	2103	1	0	0	1	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0026	2103	1	0	0	0	0	1	copy fasta	CORO2B	chr15	68573993	68732806
CORO2B_chr15_68573993_68732806	0/0	t0027	2103	1	1	0	0	0	0	copy fasta	CORO2B	chr15	68573993	68732806
CORO6_chr17_29609762_29627912	1/0	t0001	1259	151	7	32	83	6	22	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/1	t0002	1259	149	42	31	44	10	21	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0003	1259	17	13	4	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0004	1259	15	10	3	0	2	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0005	1259	5	5	0	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0006	1259	5	0	5	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0007	1259	4	4	0	0	0	0	copy fasta	CORO6	chr17	29609762	29627912