JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CORO6_chr17_29609762_29627912	0/0	t0008	1259	3	3	0	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0009	1259	3	0	0	3	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0010	1259	3	3	0	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0011	1259	2	1	1	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0012	1259	1	1	0	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0013	1259	1	0	1	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0014	1259	1	0	1	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0015	1259	1	1	0	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0016	1259	1	1	0	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0017	1259	1	0	0	1	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0018	1259	1	0	0	0	0	1	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0019	1259	1	1	0	0	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO6_chr17_29609762_29627912	0/0	t0020	1259	1	0	0	1	0	0	copy fasta	CORO6	chr17	29609762	29627912
CORO7_chr16_4349542_4421596	0/1	t0001	695	244	70	55	74	10	34	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	t0002	695	50	22	6	16	2	4	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	t0003	695	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	t0004	695	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	t0005	695	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORT_chr1_10445031_10456998	1/1	t0001	597	421	95	77	182	16	49	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	t0002	597	3	3	0	0	0	0	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	t0003	597	1	0	0	1	0	0	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	t0004	597	1	0	0	1	0	0	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	t0005	597	1	0	0	0	0	1	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	t0006	597	1	0	1	0	0	0	copy fasta	CORT	chr1	10445031	10456998
COTL1_chr16_84560596_84623078	0/1	t0001	1414	158	37	10	88	3	19	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0002	1414	102	9	34	52	2	5	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0003	1414	58	6	9	32	8	3	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0004	1414	51	14	12	8	3	14	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0005	1414	16	14	2	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0006	1414	12	1	1	10	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0007	1414	6	3	2	1	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0008	1414	6	0	0	6	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0009	1414	4	4	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0010	1415	3	0	0	3	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0011	1414	3	3	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0012	1414	2	1	1	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0013	1414	1	0	0	1	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0014	1414	1	0	0	0	0	1	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0015	1414	1	0	0	1	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0016	1414	1	1	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0017	1414	1	0	0	1	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0018	1414	1	0	1	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0019	1414	1	1	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0020	1414	1	0	0	0	0	1	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0021	1414	1	0	0	0	0	1	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0022	1414	1	0	0	0	0	1	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0023	1414	1	0	0	1	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0024	1415	1	0	0	1	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0025	1414	1	0	0	1	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0026	1415	1	1	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078