JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COTL1_chr16_84560596_84623078	0/0	t0027	1414	1	1	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0028	1414	1	0	0	0	0	1	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0029	1414	1	1	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	t0030	1414	1	1	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	1/0	t0031	1414	1	0	0	0	0	0	copy fasta	COTL1	chr16	84560596	84623078
COX10_chr17_14064504_14213677	1/0	t0001	1567	83	47	8	22	2	3	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0002	1567	62	6	13	27	5	11	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/1	t0003	1563	61	5	7	38	1	9	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0004	1567	52	2	15	25	4	6	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0005	1566	12	7	2	3	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0006	1567	12	0	0	12	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0007	1567	10	1	9	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0008	1563	3	3	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0009	1566	3	0	2	0	0	1	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0010	1567	3	2	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0011	1567	3	3	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0012	1567	3	3	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0013	1564	2	0	2	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0014	1567	2	0	2	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0015	1567	1	0	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0016	1567	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0017	1563	1	0	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0018	1566	1	0	0	1	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0019	1566	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0020	1567	1	0	0	1	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0021	1567	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0022	1567	1	0	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0023	1567	1	0	0	1	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0024	1567	1	0	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	t0025	1567	1	0	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX11_chr17_54955422_54973654	1/1	t0001	2320	247	25	37	156	4	23	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0002	2319	110	34	18	35	5	18	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0003	2319	40	5	15	14	3	3	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0004	2320	21	21	0	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0005	2319	4	4	0	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0006	2319	4	0	1	0	0	3	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0007	2319	3	3	0	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0008	2320	1	1	0	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0009	2320	1	1	0	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0010	2320	1	0	0	0	0	1	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0011	2319	1	0	0	0	0	1	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0012	2319	1	0	1	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0013	2319	1	0	0	0	0	1	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	t0014	2319	1	0	0	1	0	0	copy fasta	COX11	chr17	54955422	54973654
COX14_chr12_50107236_50125453	1/1	t0001	311	415	93	80	188	12	40	copy fasta	COX14	chr12	50107236	50125453
COX14_chr12_50107236_50125453	0/0	t0002	311	2	2	0	0	0	0	copy fasta	COX14	chr12	50107236	50125453
COX14_chr12_50107236_50125453	0/0	t0003	311	1	1	0	0	0	0	copy fasta	COX14	chr12	50107236	50125453
COX15_chr10_99705868_99737127	0/0	t0001	3799	97	22	15	48	2	10	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0002	3800	84	19	19	31	2	13	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/1	t0003	3799	77	5	8	54	2	7	copy fasta	COX15	chr10	99705868	99737127