Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRD1_chr12_130948907_131146469	0/0	t0013	2767	4	4	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0014	2767	4	0	0	3	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0015	2766	4	0	2	0	2	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0016	2766	3	3	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0017	2766	3	2	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0018	2767	3	3	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0019	2767	2	0	0	2	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0020	2766	2	2	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0021	2767	2	0	2	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0022	2766	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0023	2766	1	0	0	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0024	2766	1	0	0	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0025	2766	1	0	0	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0026	2766	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0027	2766	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0028	2766	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0029	2766	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0030	2767	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0031	2767	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0032	2767	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0033	2767	1	0	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0034	2767	1	0	0	0	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0035	2767	1	0	0	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0036	2767	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0037	2766	1	0	0	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0038	2766	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0039	2766	1	0	0	0	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0040	2766	1	0	0	0	1	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0041	2766	1	0	0	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0042	2766	1	1	0	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0043	2767	1	0	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0044	2767	1	0	0	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0045	2767	1	0	0	1	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0046	2766	1	0	0	0	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0047	2767	1	0	1	0	0	0	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD1_chr12_130948907_131146469	0/0	t0048	2767	1	0	0	0	0	1	copy fasta	ADGRD1	chr12	130948907	131146469
ADGRD2_chr9_124445451_124483580	1/0	t0001	567	220	37	56	77	10	39	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/1	t0002	567	164	40	17	95	2	9	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	t0003	567	19	19	0	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRD2_chr9_124445451_124483580	0/0	t0004	567	1	0	1	0	0	0	copy fasta	ADGRD2	chr9	124445451	124483580
ADGRE1_chr19_6882579_6945450	0/1	t0001	452	168	25	49	63	7	23	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	1/0	t0002	452	98	32	16	34	2	13	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0003	452	20	0	3	4	7	6	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0004	452	17	16	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0005	452	15	14	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0006	452	10	6	3	0	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0007	452	3	3	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0008	452	2	0	0	2	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0009	452	1	0	0	1	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0010	452	1	0	1	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450