JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COX15_chr10_99705868_99737127	1/0	t0004	3798	67	8	10	39	5	4	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0005	3799	58	16	22	8	3	9	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0006	3797	7	7	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0007	3799	3	3	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0008	3798	3	3	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0009	3798	2	0	2	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0010	3798	2	2	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0011	3800	2	0	1	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0012	3799	2	0	1	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0013	3799	2	2	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0014	3799	1	1	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0015	3798	1	1	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0016	3798	1	1	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0017	3798	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0018	3798	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0019	3799	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0020	3799	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0021	3798	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0022	3799	1	0	0	0	0	1	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0023	3799	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0024	3800	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0025	3800	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0026	3799	1	0	1	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0027	3799	1	0	1	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0028	3800	1	1	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	t0029	3799	1	1	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX16_chr14_70320081_70364683	0/1	t0001	1349	166	33	31	70	4	27	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0002	1342	117	11	12	82	2	10	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	1/0	t0003	1349	78	29	22	19	2	5	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0004	1342	3	1	1	0	0	1	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0005	1349	3	3	0	0	0	0	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0006	1349	1	0	0	0	0	1	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0007	1342	1	0	0	1	0	0	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0008	1342	1	0	1	0	0	0	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0009	1349	1	1	0	0	0	0	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0010	1349	1	1	0	0	0	0	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0011	1342	1	0	0	0	0	1	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0012	1349	1	1	0	0	0	0	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0013	1349	1	0	0	0	0	1	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	t0014	1349	1	0	1	0	0	0	copy fasta	COX16	chr14	70320081	70364683
COX17_chr3_119664532_119682406	1/1	t0001	235	410	78	69	201	14	46	copy fasta	COX17	chr3	119664532	119682406
COX17_chr3_119664532_119682406	0/0	t0002	235	8	8	0	0	0	0	copy fasta	COX17	chr3	119664532	119682406
COX17_chr3_119664532_119682406	0/0	t0003	235	1	0	0	1	0	0	copy fasta	COX17	chr3	119664532	119682406
COX17_chr3_119664532_119682406	0/0	t0004	235	1	0	1	0	0	0	copy fasta	COX17	chr3	119664532	119682406
COX18_chr4_73047362_73074716	0/1	t0001	5822	135	8	30	81	7	8	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0002	5820	104	18	17	51	3	15	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0003	5820	58	10	12	25	4	7	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0004	5822	23	21	2	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	1/0	t0005	5820	10	9	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0006	5822	5	0	3	0	0	2	copy fasta	COX18	chr4	73047362	73074716