JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COX18_chr4_73047362_73074716	0/0	t0007	5820	4	4	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0008	5821	4	1	2	0	0	1	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0009	5822	4	0	1	3	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0010	5822	4	0	0	4	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0011	5820	3	3	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0012	5820	3	0	0	0	0	3	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0013	5822	2	0	0	2	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0014	5822	2	0	0	2	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0015	5820	2	0	2	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0016	5820	2	2	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0017	5808	2	0	0	2	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0018	5822	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0019	5820	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0020	5822	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0021	5821	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0022	5820	1	0	1	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0023	5821	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0024	5822	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0025	5822	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0026	5822	1	0	0	1	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0027	5821	1	0	0	1	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0028	5821	1	0	1	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0029	5822	1	0	0	1	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0030	5822	1	0	0	1	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0031	5822	1	0	0	0	0	1	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0032	5820	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0033	5822	1	0	1	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	t0034	5820	1	0	0	0	0	1	copy fasta	COX18	chr4	73047362	73074716
COX19_chr7_959852_980549	1/1	t0001	4567	85	1	17	38	6	21	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0002	4566	76	3	18	49	2	4	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0003	4561	41	2	2	36	0	1	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0004	4567	20	0	0	20	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0005	4564	14	2	6	5	0	1	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0006	4566	10	0	2	4	1	3	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0007	4566	9	0	4	3	0	2	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0008	4566	9	5	1	0	0	3	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0009	4565	8	7	1	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0010	4566	7	7	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0011	4566	6	0	2	0	1	3	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0012	4564	6	5	1	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0013	4570	6	0	0	5	0	1	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0014	4567	5	0	0	5	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0015	4566	5	5	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0016	4566	5	4	0	0	0	1	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0017	4566	5	5	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0018	4564	5	1	3	0	0	1	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0019	4566	4	4	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0020	4565	4	4	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0021	4570	4	2	2	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0022	4561	3	0	0	3	0	0	copy fasta	COX19	chr7	959852	980549