JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COX19_chr7_959852_980549	0/0	t0073	4566	1	0	0	0	0	1	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0074	4566	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0075	4566	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0076	4566	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0077	4567	1	0	0	0	0	1	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0078	4566	1	0	0	1	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0079	4566	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0080	4566	1	0	0	0	0	1	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0081	4567	1	0	1	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0082	4564	1	0	0	0	1	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0083	4566	1	0	0	0	1	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0084	4565	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0085	4564	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0086	4564	1	0	1	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0087	4564	1	0	1	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0088	4570	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	t0089	4566	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX20_chr1_244830658_244850057	1/1	t0001	1939	215	45	41	94	7	26	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0002	1944	35	27	5	0	1	2	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0003	1944	29	8	12	0	1	8	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0004	1939	4	0	0	4	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0005	1944	3	2	1	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0006	1944	1	1	0	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0007	1944	1	1	0	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0008	1939	1	0	0	1	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0009	1939	1	0	0	1	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0010	1939	1	0	0	1	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0011	1939	1	0	0	0	1	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0012	1939	1	0	0	1	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0013	1939	1	0	0	1	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0014	1939	1	0	0	1	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0015	1939	1	0	0	1	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0016	1939	1	0	1	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	t0017	1939	1	0	0	1	0	0	copy fasta	COX20	chr1	244830658	244850057
COX4I1_chr16_85794695_85812068	1/1	t0001	253	429	97	65	209	16	40	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	0/0	t0002	253	2	1	1	0	0	0	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	0/0	t0003	253	1	0	0	1	0	0	copy fasta	COX4I1	chr16	85794695	85812068
COX4I2_chr20_31632912_31650006	1/1	t0001	154	297	94	65	81	14	41	copy fasta	COX4I2	chr20	31632912	31650006
COX4I2_chr20_31632912_31650006	0/0	t0002	154	2	0	0	1	0	1	copy fasta	COX4I2	chr20	31632912	31650006
COX4I2_chr20_31632912_31650006	0/0	t0003	154	1	0	1	0	0	0	copy fasta	COX4I2	chr20	31632912	31650006
COX5A_chr15_74914791_74943073	1/0	t0001	721	307	64	41	154	8	39	copy fasta	COX5A	chr15	74914791	74943073
COX5A_chr15_74914791_74943073	0/1	t0002	721	84	4	36	30	8	5	copy fasta	COX5A	chr15	74914791	74943073
COX5A_chr15_74914791_74943073	0/0	t0003	721	21	21	0	0	0	0	copy fasta	COX5A	chr15	74914791	74943073
COX5A_chr15_74914791_74943073	0/0	t0004	721	15	0	1	14	0	0	copy fasta	COX5A	chr15	74914791	74943073
COX5A_chr15_74914791_74943073	0/0	t0005	721	1	1	0	0	0	0	copy fasta	COX5A	chr15	74914791	74943073
COX5B_chr2_97641062_97653383	1/1	t0001	301	335	96	56	123	14	44	copy fasta	COX5B	chr2	97641062	97653383
COX5B_chr2_97641062_97653383	0/0	t0002	301	11	0	0	11	0	0	copy fasta	COX5B	chr2	97641062	97653383
COX6A1_chr12_120433113_120445730	0/0	t0001	208	321	95	57	131	7	31	copy fasta	COX6A1	chr12	120433113	120445730
COX6A1_chr12_120433113_120445730	1/1	t0002	208	104	3	23	58	7	11	copy fasta	COX6A1	chr12	120433113	120445730
COX6A1_chr12_120433113_120445730	0/0	t0003	208	1	0	0	1	0	0	copy fasta	COX6A1	chr12	120433113	120445730