JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COX6A2_chr16_31422731_31433360	1/1	t0001	79	412	92	66	196	16	40	copy fasta	COX6A2	chr16	31422731	31433360
COX6B1_chr19_35643323_35663782	1/1	t0001	228	440	98	80	200	14	46	copy fasta	COX6B1	chr19	35643323	35663782
COX6B2_chr19_55344704_55359719	1/0	t0001	1300	305	61	67	121	12	43	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0002	1300	19	0	0	18	1	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0003	1300	13	11	0	0	1	1	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0004	1300	12	6	1	4	0	1	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0005	1300	9	9	0	0	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0006	1300	7	0	0	7	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0007	1300	5	0	0	5	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0008	1300	4	4	0	0	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0009	1300	4	0	0	4	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0010	1300	4	0	0	4	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0011	1300	2	0	0	1	0	1	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0012	1300	1	0	0	1	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0013	1300	1	0	0	1	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/1	t0014	1300	1	0	0	0	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0015	1300	1	0	0	1	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0016	1300	1	0	0	1	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	t0017	1300	1	1	0	0	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6C_chr8_99872865_99898707	1/1	t0001	517	257	48	52	108	15	32	copy fasta	COX6C	chr8	99872865	99898707
COX6C_chr8_99872865_99898707	0/0	t0002	517	85	35	15	25	3	7	copy fasta	COX6C	chr8	99872865	99898707
COX6C_chr8_99872865_99898707	0/0	t0003	517	7	7	0	0	0	0	copy fasta	COX6C	chr8	99872865	99898707
COX6C_chr8_99872865_99898707	0/0	t0004	517	3	0	0	0	0	3	copy fasta	COX6C	chr8	99872865	99898707
COX6C_chr8_99872865_99898707	0/0	t0005	517	1	0	0	0	0	1	copy fasta	COX6C	chr8	99872865	99898707
COX6C_chr8_99872865_99898707	0/0	t0006	517	1	0	1	0	0	0	copy fasta	COX6C	chr8	99872865	99898707
COX6C_chr8_99872865_99898707	0/0	t0007	517	1	0	0	1	0	0	copy fasta	COX6C	chr8	99872865	99898707
COX6C_chr8_99872865_99898707	0/0	t0008	517	1	0	0	0	0	1	copy fasta	COX6C	chr8	99872865	99898707
COX7A1_chr19_36145922_36157447	1/1	t0001	101	466	100	84	212	18	50	copy fasta	COX7A1	chr19	36145922	36157447
COX7A2L_chr2_42344338_42366217	0/0	t0001	1950	137	22	14	86	6	9	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	1/0	t0002	1938	131	19	26	56	5	24	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/1	t0003	1948	62	10	13	31	2	5	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0004	1948	27	9	8	0	3	7	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0005	1950	13	12	1	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0006	1948	7	7	0	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0007	1948	4	4	0	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0008	1948	4	3	1	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0009	1950	3	0	0	3	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0010	1950	2	1	0	1	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0011	1948	2	2	0	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0012	1948	1	0	1	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0013	1948	1	0	0	1	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0014	1950	1	0	0	1	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0015	1950	1	0	1	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0016	1950	1	0	0	1	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0017	1948	1	1	0	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0018	1938	1	0	0	1	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0019	1938	1	0	1	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0020	1938	1	0	1	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0021	1938	1	0	0	0	0	1	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0022	1938	1	0	1	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217