JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COX7A2L_chr2_42344338_42366217	0/0	t0023	1938	1	0	0	1	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0024	1950	1	1	0	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	t0025	1948	1	1	0	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2_chr6_75232787_75248801	1/1	t0001	211	376	84	59	189	11	31	copy fasta	COX7A2	chr6	75232787	75248801
COX7A2_chr6_75232787_75248801	0/0	t0002	211	2	2	0	0	0	0	copy fasta	COX7A2	chr6	75232787	75248801
COX7A2_chr6_75232787_75248801	0/0	t0003	211	1	0	0	0	0	1	copy fasta	COX7A2	chr6	75232787	75248801
COX7A2_chr6_75232787_75248801	0/0	t0004	211	1	0	1	0	0	0	copy fasta	COX7A2	chr6	75232787	75248801
COX7A2_chr6_75232787_75248801	0/0	t0005	211	1	0	0	1	0	0	copy fasta	COX7A2	chr6	75232787	75248801
COX7A2_chr6_75232787_75248801	0/0	t0006	211	1	0	0	0	1	0	copy fasta	COX7A2	chr6	75232787	75248801
COX7B2_chr4_46729827_46914245	1/0	t0001	311	163	52	31	53	5	21	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/0	t0002	311	66	15	9	34	4	4	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/1	t0003	311	61	4	12	40	0	4	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/0	t0004	311	4	1	0	1	1	1	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/0	t0005	311	3	0	0	3	0	0	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/0	t0006	311	2	2	0	0	0	0	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/0	t0007	311	1	0	0	1	0	0	copy fasta	COX7B2	chr4	46729827	46914245
COX7B_chrX_77894468_77912376	0/0	t0001	2202	129	22	17	69	5	16	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0002	2201	95	16	21	38	6	14	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0003	2203	29	4	6	15	0	4	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0004	2195	9	9	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0005	2195	4	4	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0006	2194	2	1	1	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0007	2196	2	2	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0008	2196	2	2	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0009	2203	2	1	1	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0010	2194	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/1	t0011	2200	1	0	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0012	2195	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0013	2200	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0014	2195	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0015	2200	1	0	0	1	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0016	2197	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0017	2196	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0018	2201	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	1/0	t0019	2202	1	0	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0020	2197	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0021	2202	1	0	0	1	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0022	5536	1	0	0	1	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0023	2202	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0024	2203	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0025	2203	1	0	0	1	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0026	2203	1	1	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0027	2202	1	0	0	1	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0028	2192	1	0	0	1	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	t0029	2203	1	0	0	1	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7C_chr5_86612941_86625962	1/1	t0001	438	407	95	72	175	16	47	copy fasta	COX7C	chr5	86612941	86625962
COX7C_chr5_86612941_86625962	0/0	t0002	438	2	0	0	2	0	0	copy fasta	COX7C	chr5	86612941	86625962
COX7C_chr5_86612941_86625962	0/0	t0003	438	1	1	0	0	0	0	copy fasta	COX7C	chr5	86612941	86625962
COX7C_chr5_86612941_86625962	0/0	t0004	438	1	0	0	1	0	0	copy fasta	COX7C	chr5	86612941	86625962
COX7C_chr5_86612941_86625962	0/0	t0005	438	1	0	0	0	0	1	copy fasta	COX7C	chr5	86612941	86625962