JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
COX8A_chr11_63969620_63981543	1/1	t0001	285	333	88	68	123	12	40	copy fasta	COX8A	chr11	63969620	63981543
COX8A_chr11_63969620_63981543	0/0	t0002	285	2	2	0	0	0	0	copy fasta	COX8A	chr11	63969620	63981543
COX8A_chr11_63969620_63981543	0/0	t0003	285	1	0	0	1	0	0	copy fasta	COX8A	chr11	63969620	63981543
COX8C_chr14_93342182_93353356	0/1	t0001	324	382	58	71	203	16	33	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	t0002	324	31	25	3	0	0	3	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	t0003	324	7	7	0	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	t0004	324	6	6	0	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	t0005	324	1	0	0	1	0	0	copy fasta	COX8C	chr14	93342182	93353356
CPA1_chr7_130375494_130393108	1/1	t0001	125	412	76	71	201	16	46	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	t0002	125	10	9	1	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	t0003	125	7	7	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	t0004	124	5	0	0	5	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA2_chr7_130261863_130294798	1/1	t0001	71	400	88	70	176	16	48	copy fasta	CPA2	chr7	130261863	130294798
CPA3_chr3_148860296_148902203	1/0	t0001	509	214	62	38	78	7	28	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/1	t0002	509	165	24	33	80	9	18	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	t0003	508	14	11	3	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	t0004	509	6	0	0	6	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	t0005	509	1	1	0	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA4_chr7_130288161_130329180	0/0	t0001	1520	97	17	7	58	2	13	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0002	1528	93	3	24	55	3	8	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0003	1522	35	14	7	4	3	7	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0004	1524	28	4	3	17	2	2	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0005	1526	22	13	0	9	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0006	1524	15	9	2	2	0	2	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0007	1519	15	0	10	1	3	1	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0008	1530	14	2	4	5	1	2	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0009	1532	11	1	3	4	0	3	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	1/0	t0010	1525	10	8	1	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0011	1521	8	0	4	2	2	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0012	1523	6	0	3	3	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0013	1522	5	5	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0014	1523	4	4	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0015	1528	4	1	2	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0016	1534	4	0	0	2	0	2	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0017	1518	3	3	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0018	1516	3	1	0	0	0	2	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0019	1522	3	2	1	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0020	1520	2	1	1	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0021	1534	2	0	0	2	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0022	1532	2	0	0	2	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0023	1526	2	2	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0024	1519	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0025	1526	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/1	t0026	1518	1	0	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0027	1504	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0028	1538	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0029	1518	1	0	1	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0030	1538	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0031	1524	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0032	1519	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180