JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPA4_chr7_130288161_130329180	0/0	t0033	1521	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0034	1535	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0035	1525	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0036	1531	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	t0037	1529	1	0	1	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA5_chr7_130339816_130373730	0/0	t0001	675	226	52	43	100	6	25	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	1/0	t0002	675	121	20	16	64	5	15	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	t0003	675	40	6	4	22	2	6	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	t0004	674	15	0	9	2	3	1	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/1	t0005	675	4	3	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	t0006	675	3	3	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	t0007	675	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	t0008	675	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	t0009	675	1	0	0	0	0	1	copy fasta	CPA5	chr7	130339816	130373730
CPA6_chr8_67417038_67751360	1/1	t0001	698	136	70	17	33	2	12	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	t0002	698	3	0	3	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	t0003	698	2	0	0	2	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	t0004	698	2	2	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	t0005	698	1	0	0	1	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPAMD8_chr19_16887951_17031810	0/0	t0001	326	160	68	38	29	3	22	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	1/1	t0002	326	116	10	23	58	7	16	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	t0003	326	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	t0004	326	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPB1_chr3_148822811_148865187	1/1	t0001	199	456	98	80	208	18	50	copy fasta	CPB1	chr3	148822811	148865187
CPB2_chr13_46048186_46110033	0/1	t0001	453	173	45	36	71	4	16	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	t0002	453	93	23	17	46	2	5	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	t0003	453	54	8	9	25	3	9	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	1/0	t0004	453	8	0	6	0	1	0	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	t0005	453	2	2	0	0	0	0	copy fasta	CPB2	chr13	46048186	46110033
CPD_chr17_30373927_30474989	0/0	t0001	5230	121	29	24	45	3	20	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	1/1	t0002	5230	102	15	26	37	5	17	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0003	5230	13	12	1	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0004	5226	10	0	1	8	1	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0005	5224	9	6	2	0	1	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0006	5230	5	5	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0007	5228	4	4	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0008	5224	4	4	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0009	5230	4	3	1	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0010	5230	3	0	1	0	2	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0011	5230	3	0	3	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0012	5230	2	0	0	2	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0013	5230	2	2	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0014	5224	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0015	5224	1	0	1	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0016	5226	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0017	5230	1	0	0	0	0	1	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0018	5230	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0019	5230	1	0	1	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0020	5230	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0021	5230	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989