JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPD_chr17_30373927_30474989	0/0	t0022	5230	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0023	5230	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0024	5230	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0025	5230	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0026	5230	1	0	1	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	t0027	5230	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPEB1_chr15_82538201_82652363	0/0	t0001	1716	61	2	11	43	1	4	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0002	1715	58	8	4	30	2	14	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0003	1714	55	12	11	28	1	3	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/1	t0004	1717	25	11	10	0	1	2	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	1/0	t0005	1716	12	1	4	3	2	1	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0006	1714	11	0	3	4	2	2	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0007	1713	10	4	1	2	2	1	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0008	1715	9	0	0	9	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0009	1718	8	7	1	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0010	1717	8	8	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0011	1717	7	0	1	4	0	2	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0012	1717	6	0	1	5	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0013	1716	6	0	0	6	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0014	1719	5	0	3	0	0	2	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0015	1717	5	5	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0016	1716	5	1	0	1	1	2	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0017	1715	5	0	0	5	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0018	1718	4	1	3	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0019	1716	4	0	1	3	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0020	1718	4	4	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0021	1715	4	0	2	0	2	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0022	1714	4	4	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0023	1714	4	4	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0024	1717	3	3	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0025	1718	2	1	0	0	1	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0026	1716	2	2	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0027	1716	2	1	0	0	1	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0028	1716	2	0	2	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0029	1715	2	0	0	2	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0030	1718	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0031	1719	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0032	1717	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0033	1718	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0034	1717	1	0	1	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0035	1717	1	0	0	1	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0036	1717	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0037	1718	1	0	1	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0038	1718	1	0	0	0	1	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0039	1714	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0040	1714	1	0	0	0	1	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0041	1715	1	0	0	1	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0042	1715	1	0	0	1	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0043	1715	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0044	1715	1	0	0	0	0	1	copy fasta	CPEB1	chr15	82538201	82652363