JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPEB1_chr15_82538201_82652363	0/0	t0045	1713	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0046	1713	1	0	0	1	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0047	1715	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0048	1714	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0049	1716	1	1	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	t0050	1716	1	0	0	1	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB2_chr4_14997481_15075151	1/1	t0001	3965	74	31	16	3	5	17	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0002	3965	56	21	4	25	0	6	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0003	3966	52	5	17	18	6	6	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0004	3965	45	1	7	37	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0005	3965	13	4	1	5	1	2	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0006	3963	13	0	3	6	0	4	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0007	3960	7	7	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0008	3960	5	5	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0009	3965	5	5	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0010	3965	2	0	0	2	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0011	3965	1	0	0	0	0	1	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0012	3952	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0013	3965	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0014	3965	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0015	3965	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0016	3965	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0017	3965	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0018	3966	1	0	1	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0019	3966	1	0	1	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0020	3965	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0021	3965	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0022	3965	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0023	3966	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0024	3963	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0025	3966	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	t0026	3965	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB3_chr10_92041692_92296078	0/0	t0001	5692	62	1	12	36	2	11	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0002	5691	58	6	14	25	2	11	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0003	5691	40	2	9	17	3	9	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0004	5691	18	16	1	0	0	1	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0005	5701	13	11	2	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/1	t0006	5693	8	2	2	0	1	2	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0007	5697	7	7	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	1/0	t0008	5685	6	5	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0009	5689	5	5	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0010	5693	5	0	1	4	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0011	5699	5	5	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0012	5694	4	0	0	2	0	2	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0013	5681	4	3	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0014	5690	3	0	0	3	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0015	5693	3	2	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0016	5692	3	1	1	0	1	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0017	5687	3	0	0	3	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0018	5692	2	0	0	1	0	1	copy fasta	CPEB3	chr10	92041692	92296078