Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRE1_chr19_6882579_6945450	0/0	t0011	452	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0012	452	1	0	0	0	0	1	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE1_chr19_6882579_6945450	0/0	t0013	452	1	1	0	0	0	0	copy fasta	ADGRE1	chr19	6882579	6945450
ADGRE2_chr19_14727392_14783560	0/0	t0001	4320	52	11	17	17	0	7	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/1	t0002	4320	24	3	6	13	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0003	4320	13	4	1	5	1	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0004	4319	12	1	5	3	2	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	1/0	t0005	4320	9	1	1	4	0	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0006	4320	8	5	0	3	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0007	4320	7	7	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0008	4320	7	1	1	2	1	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0009	4320	7	4	1	0	0	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0010	4319	6	0	4	0	1	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0011	4320	4	0	1	2	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0012	4319	4	3	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0013	4320	4	0	2	0	0	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0014	4320	3	3	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0015	4320	3	0	0	3	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0016	4320	3	3	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0017	4319	3	3	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0018	4320	3	0	0	1	0	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0019	4320	2	1	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0020	4320	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0021	4319	2	1	0	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0022	4319	2	1	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0023	4319	2	0	1	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0024	4320	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0025	4319	2	0	0	2	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0026	4319	2	2	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0027	4320	2	1	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0028	4319	2	0	0	0	0	2	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0029	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0030	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0031	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0032	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0033	4319	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0034	4320	1	0	0	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0035	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0036	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0037	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0038	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0039	4319	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0040	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0041	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0042	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0043	4320	1	1	0	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0044	4320	1	0	1	0	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0045	4320	1	0	0	0	0	1	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0046	4320	1	0	0	1	0	0	copy fasta	ADGRE2	chr19	14727392	14783560
ADGRE2_chr19_14727392_14783560	0/0	t0047	4320	1	0	0	0	1	0	copy fasta	ADGRE2	chr19	14727392	14783560