JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPEB3_chr10_92041692_92296078	0/0	t0019	5697	2	2	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0020	5685	2	2	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0021	5692	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0022	5691	1	0	0	1	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0023	5692	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0024	5692	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0025	5701	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0026	5693	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0027	5685	1	0	0	0	1	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0028	5685	1	0	0	1	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0029	5691	1	0	0	0	0	1	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0030	5691	1	0	0	1	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0031	5692	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0032	5693	1	0	0	0	0	1	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0033	5695	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0034	5695	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0035	5697	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0036	5695	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0037	5700	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0038	5703	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0039	5668	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0040	5691	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0041	5691	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0042	5691	1	0	0	1	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0043	5693	1	0	0	0	0	1	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0044	5691	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	t0045	5685	1	0	0	1	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB4_chr5_173883349_173966980	0/0	t0001	7229	70	0	17	50	0	3	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0002	7227	64	9	8	35	1	11	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0003	7228	43	11	8	19	2	3	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0004	7235	41	4	12	16	4	5	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0005	7228	40	14	9	10	1	6	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	1/0	t0006	7229	24	15	5	0	1	2	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/1	t0007	7228	17	1	4	9	1	1	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0008	7229	7	7	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0009	7223	3	3	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0010	7228	3	3	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0011	7228	3	3	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0012	7230	3	0	0	3	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0013	7229	3	3	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0014	7227	2	0	0	0	0	2	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0015	7228	2	2	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0016	7229	2	0	1	0	0	1	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0017	7229	2	0	0	0	0	2	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0018	7227	2	0	2	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0019	7228	2	2	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0020	7229	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0021	7228	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0022	7228	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0023	7228	1	0	1	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980