JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPEB4_chr5_173883349_173966980	0/0	t0024	7228	1	0	1	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0025	7227	1	0	1	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0026	7228	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0027	7228	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0028	7227	1	0	0	0	0	1	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0029	7227	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0030	7229	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0031	7229	1	0	1	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0032	7229	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0033	7229	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0034	7229	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0035	7228	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0036	7228	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0037	7229	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0038	7227	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0039	7177	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0040	7228	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0041	7229	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0042	7229	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0043	7228	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0044	7229	1	0	0	0	0	1	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0045	7229	1	0	0	0	0	1	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0046	7227	1	0	0	0	0	1	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0047	7228	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0048	7228	1	0	1	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0049	7229	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0050	7228	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0051	7228	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0052	7228	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0053	7228	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0054	7234	1	0	1	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0055	7235	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0056	7235	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0057	7235	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	t0058	7235	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPED1_chr7_120983711_121302442	1/1	t0001	2224	59	27	17	9	2	2	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0002	2224	34	17	9	6	1	1	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0003	2224	16	9	4	2	0	1	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0004	2224	9	2	3	3	0	1	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0005	2224	7	6	0	0	1	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0006	2224	6	5	1	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0007	2224	2	2	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0008	2224	2	2	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0009	2224	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0010	2224	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0011	2224	1	0	0	0	0	1	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0012	2224	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	t0013	2224	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPE_chr4_165374008_165503547	1/1	t0001	1152	227	57	42	86	5	35	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	t0002	1152	62	29	9	22	1	1	copy fasta	CPE	chr4	165374008	165503547