JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPE_chr4_165374008_165503547	0/0	t0003	1152	35	0	1	33	0	1	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	t0004	1152	2	2	0	0	0	0	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	t0005	1152	2	2	0	0	0	0	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	t0006	1152	1	1	0	0	0	0	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	t0007	1152	1	1	0	0	0	0	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	t0008	1152	1	0	0	0	0	1	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	t0009	1152	1	0	0	1	0	0	copy fasta	CPE	chr4	165374008	165503547
CPHXL2_chr16_75655227_75682009	0/1	t0001	38	326	77	47	165	10	26	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	1/0	t0002	38	58	7	25	5	6	14	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	t0003	38	4	0	0	4	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	t0004	38	4	4	0	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL_chr16_75709131_75731490	1/1	t0001	142	384	82	74	164	18	44	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	t0002	142	4	4	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPLANE1_chr5_37101235_37254376	1/1	t0001	1547	227	45	49	103	12	16	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0002	1547	9	8	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0003	1547	8	8	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0004	1548	6	6	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0005	1547	6	6	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0006	1547	2	1	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0007	1547	2	0	0	2	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0008	1547	2	0	0	2	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0009	1547	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0010	1547	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0011	1547	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0012	1547	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0013	1547	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	t0014	1547	1	0	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE2_chr1_16226692_16242183	0/1	t0001	798	241	37	42	122	14	25	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	1/0	t0002	798	87	12	31	24	2	17	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0003	798	15	14	1	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0004	798	15	15	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0005	798	12	6	4	0	0	2	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0006	798	4	4	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0007	798	1	0	0	1	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0008	798	1	0	0	1	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0009	798	1	1	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0010	798	1	1	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0011	798	1	1	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	t0012	798	1	1	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLX1_chr4_779957_831129	0/0	t0001	1708	89	14	13	57	3	2	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0002	1698	51	3	16	26	0	6	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0003	1708	43	16	3	14	2	8	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0004	1708	41	0	7	29	1	4	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0005	1708	38	1	3	33	0	1	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0006	1707	30	5	6	12	2	5	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0007	1708	28	14	8	0	5	1	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0008	1708	25	24	1	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0009	1698	18	0	7	0	3	8	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	1/0	t0010	1708	17	0	13	0	2	1	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0011	1708	10	0	1	2	0	7	copy fasta	CPLX1	chr4	779957	831129