JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPLX1_chr4_779957_831129	0/0	t0012	1708	3	3	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/1	t0013	1684	3	0	2	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0014	1708	2	0	0	2	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0015	1708	2	0	1	0	0	1	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0016	1708	2	1	1	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0017	1709	2	0	0	1	0	1	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0018	1708	1	1	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0019	1708	1	0	0	0	0	1	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0020	1708	1	0	1	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0021	1709	1	1	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0022	1709	1	0	1	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0023	1708	1	1	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0024	1708	1	1	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0025	1708	1	1	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0026	1708	1	0	0	1	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0027	1708	1	0	0	1	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0028	1708	1	0	0	0	0	1	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	t0029	1698	1	0	0	0	0	1	copy fasta	CPLX1	chr4	779957	831129
CPLX2_chr5_175866578_175889021	0/1	t0001	4193	99	6	28	49	6	9	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0002	4194	44	0	8	33	0	3	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0003	4193	36	6	10	9	2	9	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0004	4193	17	1	0	15	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0005	4193	15	1	7	0	5	2	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0006	4193	13	2	1	9	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	1/0	t0007	4193	10	8	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0008	4192	9	6	3	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0009	4193	9	0	2	5	0	2	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0010	4193	9	9	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0011	4193	7	2	2	1	1	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0012	4193	7	0	1	6	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0013	4193	6	4	0	1	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0014	4193	5	0	1	4	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0015	4193	5	5	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0016	4193	4	4	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0017	4191	3	3	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0018	4193	3	0	0	3	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0019	4193	3	2	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0020	4193	3	3	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0021	4194	3	0	0	2	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0022	4193	3	1	1	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0023	4193	3	1	1	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0024	4193	3	0	0	3	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0025	4193	2	2	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0026	4193	2	2	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0027	4193	2	2	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0028	4193	2	0	0	2	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0029	4193	2	2	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0030	4193	2	0	0	0	0	2	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0031	4193	2	2	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0032	4193	2	1	0	0	0	1	copy fasta	CPLX2	chr5	175866578	175889021