JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPLX2_chr5_175866578_175889021	0/0	t0033	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0034	4193	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0035	4193	1	0	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0036	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0037	4193	1	0	0	0	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0038	4193	1	0	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0039	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0040	4193	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0041	4193	1	0	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0042	4193	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0043	4193	1	0	0	0	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0044	4193	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0045	4193	1	0	0	0	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0046	4193	1	0	0	0	1	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0047	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0048	4193	1	0	0	0	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0049	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0050	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0051	4193	1	0	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0052	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0053	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0054	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0055	4192	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0056	4192	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0057	4194	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0058	4191	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0059	4193	1	0	0	0	1	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0060	4193	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0061	4193	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0062	4194	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0063	4194	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0064	4194	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0065	4194	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0066	4194	1	0	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0067	4194	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0068	4194	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0069	4193	1	0	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0070	4193	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0071	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0072	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0073	4193	1	0	0	1	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0074	4193	1	0	0	0	0	1	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	t0075	4193	1	1	0	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX3_chr15_74821627_74836802	1/1	t0001	1526	252	74	49	96	14	17	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0002	1526	101	3	9	78	1	10	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0003	1526	73	6	10	39	3	15	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0004	1526	4	3	1	0	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0005	1526	3	3	0	0	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0006	1526	2	0	0	2	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0007	1526	1	1	0	0	0	0	copy fasta	CPLX3	chr15	74821627	74836802