JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPLX3_chr15_74821627_74836802	0/0	t0008	1526	1	0	1	0	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0009	1526	1	0	0	1	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0010	1526	1	0	0	1	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0011	1526	1	0	0	1	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0012	1526	1	0	0	0	0	1	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	t0013	1526	1	0	0	0	0	1	copy fasta	CPLX3	chr15	74821627	74836802
CPLX4_chr18_59290402_59323649	0/0	t0001	1469	87	11	14	42	3	17	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	1/0	t0002	1484	60	8	15	29	3	4	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0003	1470	53	0	4	46	0	3	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0004	1484	45	15	7	16	1	6	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0005	1483	20	0	2	18	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0006	1484	20	11	3	1	3	2	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/1	t0007	1483	19	0	13	2	0	3	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0008	1484	16	1	2	13	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0009	1467	13	13	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0010	1470	13	0	0	13	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0011	1485	7	7	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0012	1485	6	2	0	2	0	2	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0013	1482	6	1	2	0	2	1	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0014	1483	4	4	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0015	1484	4	0	1	0	2	1	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0016	1469	4	1	1	2	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0017	1470	4	0	0	3	0	1	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0018	1482	3	3	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0019	1482	3	0	2	0	1	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0020	1483	3	0	1	0	0	2	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0021	1483	2	0	0	2	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0022	1484	2	1	0	0	1	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0023	1484	2	2	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0024	1483	2	2	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0025	1468	1	1	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0026	1483	1	1	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0027	1484	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0028	1472	1	1	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0029	1483	1	0	1	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0030	1469	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0031	1482	1	1	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0032	1470	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0033	1469	1	0	0	0	0	1	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0034	1470	1	0	0	0	0	1	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0035	1469	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0036	1470	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0037	1469	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0038	1471	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0039	1483	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0040	1482	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0041	1485	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0042	1470	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0043	1483	1	1	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	t0044	1482	1	1	0	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649