JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPM_chr12_68846175_68938171	0/0	t0001	5296	166	7	25	108	3	23	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0002	5296	22	6	7	4	3	2	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0003	5296	17	5	4	1	3	4	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0004	5297	11	11	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0005	5298	9	1	6	0	0	2	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0006	5297	7	1	0	5	0	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0007	5295	7	7	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0008	5295	6	5	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0009	5296	6	0	4	1	1	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0010	5296	6	0	0	6	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0011	5298	5	1	2	0	0	2	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0012	5294	5	5	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0013	5298	3	3	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0014	5297	3	0	0	2	1	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0015	5301	3	3	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0016	5297	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0017	5294	2	1	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0018	5292	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0019	5296	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0020	5294	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0021	5276	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0022	5296	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0023	5293	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0024	5296	2	0	0	0	1	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0025	5292	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0026	5297	2	2	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0027	5299	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0028	5297	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0029	5292	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0030	5291	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0031	5297	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0032	5298	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0033	5300	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0034	5300	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0035	5299	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0036	5298	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0037	5298	1	0	0	0	0	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0038	5298	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0039	5298	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0040	5294	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0041	5294	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0042	5297	1	0	0	0	0	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0043	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0044	5296	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0045	5296	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0046	5295	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0047	4415	1	0	0	0	0	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0048	5298	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	1/0	t0049	5296	1	0	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0050	5297	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171