JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPM_chr12_68846175_68938171	0/0	t0051	5298	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0052	5298	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0053	5297	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0054	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0055	5296	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/1	t0056	5296	1	0	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0057	5296	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0058	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0059	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0060	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0061	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0062	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0063	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0064	5296	1	0	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0065	5293	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0066	5297	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0067	5297	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	t0068	5297	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPN1_chr10_100037193_100086869	1/0	t0001	479	340	92	71	134	10	32	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/1	t0002	479	5	0	1	0	0	3	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	t0003	479	2	2	0	0	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	t0004	479	1	0	0	0	0	1	copy fasta	CPN1	chr10	100037193	100086869
CPN2_chr3_194334768_194356328	0/0	t0001	1388	139	41	20	57	5	16	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	1/0	t0002	1388	96	3	27	39	7	19	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/1	t0003	1388	93	7	20	51	3	11	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0004	1388	51	26	4	20	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0005	1388	11	0	0	10	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0006	1388	10	10	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0007	1388	5	0	0	5	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0008	1388	5	5	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0009	1388	4	0	0	4	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0010	1388	3	3	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0011	1388	2	0	2	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0012	1388	2	2	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0013	1388	2	0	0	2	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0014	1388	2	0	2	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0015	1388	2	2	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0016	1388	1	0	1	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0017	1388	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0018	1388	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0019	1388	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0020	1388	1	0	1	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0021	1388	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0022	1388	1	0	0	0	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0023	1388	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0024	1388	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0025	1388	1	0	0	0	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0026	1388	1	0	1	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0027	1388	1	0	0	0	1	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	t0028	1388	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328