JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPNE1_chr20_35621044_35669900	1/1	t0001	339	270	84	50	90	10	34	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	t0002	339	2	0	0	2	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE2_chr16_57087583_57153369	1/0	t0001	955	336	81	57	146	12	39	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	t0002	955	11	10	0	0	0	1	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/1	t0003	955	7	2	1	0	2	1	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	t0004	956	4	0	0	4	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	t0005	955	1	1	0	0	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	t0006	955	1	0	0	1	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	t0007	955	1	0	0	0	0	1	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	t0008	955	1	0	0	1	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE3_chr8_86509435_86566498	0/1	t0001	3245	77	5	22	42	2	5	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0002	3245	70	6	20	36	2	6	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	1/0	t0003	3244	53	1	2	40	2	7	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0004	3245	46	19	7	14	1	5	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0005	3245	38	19	8	3	1	7	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0006	3245	13	12	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0007	3247	9	8	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0008	3245	8	0	0	8	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0009	3245	6	5	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0010	3245	5	5	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0011	3245	4	4	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0012	3245	3	3	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0013	3244	1	0	0	0	0	1	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0014	3245	1	1	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0015	3244	1	0	0	1	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0016	3244	1	0	0	0	0	1	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0017	3244	1	0	0	0	0	1	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0018	3244	1	0	0	0	0	1	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0019	3245	1	1	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	t0020	3245	1	1	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE4_chr3_131528569_132040014	0/1	t0001	2075	47	25	7	9	0	5	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0002	2075	17	12	1	0	0	4	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0003	2076	7	1	1	3	0	2	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0004	2073	3	1	2	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0005	2076	3	0	1	1	0	1	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	1/0	t0006	2075	2	0	0	1	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0007	2076	2	0	0	2	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0008	2075	2	1	0	1	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0009	2075	2	0	0	2	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0010	2075	2	2	0	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0011	2073	2	2	0	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0012	2075	1	1	0	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0013	2075	1	1	0	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0014	2076	1	0	0	1	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0015	2073	1	1	0	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	t0016	2075	1	1	0	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE5_chr6_36735775_36844444	0/0	t0001	1561	138	36	18	57	8	19	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	1/0	t0002	1561	92	19	15	37	8	12	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0003	1562	44	0	11	26	1	6	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0004	1562	36	1	10	23	1	1	copy fasta	CPNE5	chr6	36735775	36844444