JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPNE5_chr6_36735775_36844444	0/1	t0005	1561	28	11	5	11	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0006	1561	21	20	1	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0007	1561	4	4	0	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0008	1561	4	0	0	4	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0009	1562	3	0	0	1	0	2	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0010	1561	2	0	0	2	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0011	1561	1	0	1	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0012	1561	1	0	0	1	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0013	1562	1	0	1	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0014	1562	1	0	0	1	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0015	1562	1	0	0	1	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0016	1561	1	1	0	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0017	1561	1	1	0	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	t0018	1561	1	1	0	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE6_chr14_24066562_24083087	1/1	t0001	322	437	95	73	209	16	42	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	t0002	322	1	1	0	0	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	t0003	322	1	0	0	1	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	t0004	322	1	0	1	0	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE7_chr16_89570758_89602246	1/0	t0001	766	145	48	37	19	13	27	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/1	t0002	766	76	13	25	28	3	6	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0003	748	61	0	1	59	0	1	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0004	766	28	4	3	18	0	3	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0005	766	14	12	2	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0006	757	13	13	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0007	748	3	0	0	3	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0008	766	2	0	0	2	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0009	766	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0010	748	1	0	0	0	0	1	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0011	766	1	0	0	0	0	1	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0012	766	1	0	0	0	0	1	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0013	766	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	t0014	766	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE8_chr12_38647203_38910591	1/0	t0001	1737	105	31	16	54	0	3	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0002	1749	58	3	15	26	6	8	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0003	1749	50	5	8	33	1	3	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/1	t0004	1750	39	7	19	4	3	5	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0005	1737	19	18	1	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0006	1748	15	2	6	5	0	2	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0007	1738	12	6	0	6	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0008	1748	6	1	0	4	0	1	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0009	1751	5	5	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0010	1749	3	0	0	3	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0011	1748	3	0	0	0	0	3	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0012	1750	3	3	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0013	1751	3	3	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0014	1750	3	0	0	3	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0015	1737	2	2	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0016	1749	2	0	0	2	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0017	1751	2	1	1	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0018	1751	2	0	0	0	1	1	copy fasta	CPNE8	chr12	38647203	38910591