JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPNE8_chr12_38647203_38910591	0/0	t0019	1749	1	0	0	1	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0020	1748	1	1	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0021	1737	1	1	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0022	1739	1	0	0	0	1	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0023	1748	1	0	0	1	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0024	1749	1	0	1	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0025	1749	1	0	1	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0026	1749	1	0	0	0	1	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0027	1750	1	1	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	t0028	1750	1	0	0	0	1	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE9_chr3_9698833_9734908	1/1	t0001	381	438	94	80	200	18	44	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	t0002	381	1	1	0	0	0	0	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	t0003	381	1	1	0	0	0	0	copy fasta	CPNE9	chr3	9698833	9734908
CPOX_chr3_98574446_98598611	0/1	t0001	1351	142	44	30	50	8	9	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0002	1351	121	18	20	63	6	14	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	1/0	t0003	1345	120	7	31	55	4	22	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0004	1351	14	6	0	7	0	1	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0005	1351	7	0	0	7	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0006	1351	7	0	0	7	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0007	1351	6	5	1	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0008	1351	6	6	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0009	1350	4	4	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0010	1345	3	0	0	3	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0011	1345	2	0	0	2	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0012	1351	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0013	1351	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0014	1351	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0015	1345	1	0	0	1	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0016	1351	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0017	1351	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0018	1351	1	0	1	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0019	1351	1	0	1	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0020	1351	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0021	1351	1	0	1	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0022	1388	1	0	0	1	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0023	1351	1	0	1	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0024	1345	1	0	0	1	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0025	1351	1	0	0	1	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0026	1351	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	t0027	1345	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPO_chr2_206934518_206974474	1/1	t0001	121	421	97	72	194	16	40	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	t0002	121	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPPED1_chr16_12654799_12808887	0/0	t0001	5197	61	12	15	13	5	16	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0002	5199	50	0	9	37	0	4	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/1	t0003	5199	27	0	4	17	1	4	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0004	5198	13	11	2	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0005	5201	13	1	1	7	2	2	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0006	5201	10	1	2	7	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0007	5200	8	7	1	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0008	5195	7	3	2	0	1	1	copy fasta	CPPED1	chr16	12654799	12808887