JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPPED1_chr16_12654799_12808887	0/0	t0059	5181	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0060	5193	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0061	5197	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0062	5199	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0063	5193	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0064	5196	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0065	5200	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0066	5202	1	1	0	0	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPPED1_chr16_12654799_12808887	0/0	t0067	5201	1	0	0	1	0	0	copy fasta	CPPED1	chr16	12654799	12808887
CPQ_chr8_96640242_97148501	1/1	t0001	514	104	43	14	32	6	7	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	t0002	513	20	13	6	0	0	1	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	t0003	514	1	0	0	1	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPQ_chr8_96640242_97148501	0/0	t0004	514	1	0	0	1	0	0	copy fasta	CPQ	chr8	96640242	97148501
CPS1_chr2_210551599_210684107	1/0	t0001	1258	69	10	4	52	1	1	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0002	1261	45	14	7	21	0	3	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0003	1258	44	12	3	26	1	2	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0004	1261	43	6	7	21	0	9	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0005	1258	39	8	13	11	0	7	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0006	1261	25	9	1	11	0	4	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0007	1261	21	11	6	0	3	1	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0008	1258	9	4	2	0	0	3	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0009	1261	8	7	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0010	1261	6	2	3	0	1	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0011	1258	5	2	2	0	1	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0012	1258	3	0	3	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/1	t0013	1261	3	0	1	0	1	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0014	1258	2	2	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0015	1258	2	0	0	0	0	2	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0016	1261	2	0	2	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0017	1261	2	0	2	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0018	1261	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0019	1261	1	0	0	0	0	1	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0020	1261	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0021	1258	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0022	1258	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0023	1258	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0024	1261	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0025	1261	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0026	1261	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0027	1249	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0028	1261	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	t0029	1261	1	0	0	0	0	1	copy fasta	CPS1	chr2	210551599	210684107
CPSF1_chr8_144388231_144414335	1/1	t0001	149	349	95	70	126	16	40	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	t0002	149	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF2_chr14_92116969_92177145	0/0	t0001	10654	31	3	1	25	0	2	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	1/0	t0002	10655	26	6	10	0	3	6	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0003	10679	22	1	5	14	1	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0004	10678	18	2	1	14	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0005	10673	16	2	2	10	0	2	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0006	10674	11	3	1	7	0	0	copy fasta	CPSF2	chr14	92116969	92177145