JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPSF2_chr14_92116969_92177145	0/0	t0007	10656	9	0	9	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0008	10655	8	2	0	5	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0009	10655	8	0	0	7	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0010	10680	8	0	3	4	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0011	10654	5	2	1	0	2	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0012	10672	5	0	0	5	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0013	10675	5	0	1	4	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0014	10662	4	3	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0015	10654	4	2	0	0	0	2	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0016	10671	4	2	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0017	10672	4	2	1	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0018	10680	4	0	0	4	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0019	10681	4	0	1	2	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0020	10661	3	0	0	3	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0021	10662	3	0	0	3	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0022	10650	3	1	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0023	10654	3	0	0	0	0	3	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0024	10655	3	0	0	3	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0025	10657	3	3	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0026	10655	3	3	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0027	10655	3	1	1	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0028	10656	3	1	1	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0029	10678	3	3	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0030	10655	2	0	1	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0031	10660	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0032	10660	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0033	10662	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0034	10683	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0035	10684	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0036	10689	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0037	10685	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0038	10655	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0039	10655	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0040	10650	2	2	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0041	10655	2	0	0	0	1	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0042	10676	2	2	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0043	10671	2	2	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0044	10674	2	2	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0045	10671	2	0	2	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0046	10664	2	0	1	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0047	10679	2	0	0	1	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0048	10678	2	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0049	10680	2	0	2	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0050	10683	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0051	10675	2	0	0	2	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0052	10650	2	2	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0053	10672	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0054	10673	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0055	10656	1	0	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0056	10687	1	0	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145