JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CPSF2_chr14_92116969_92177145	0/0	t0107	10655	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0108	10656	1	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0109	10658	1	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0110	10660	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0111	10655	1	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0112	10655	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0113	10672	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0114	10658	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0115	10659	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0116	10678	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0117	10677	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0118	10678	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0119	10679	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0120	10678	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0121	10680	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0122	10671	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0123	10673	1	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0124	10659	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0125	10659	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0126	10660	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0127	10671	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0128	10673	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0129	10672	1	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0130	10673	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0131	10673	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0132	10674	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0133	10673	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0134	10674	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0135	10676	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0136	10677	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0137	10675	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0138	10677	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0139	10678	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0140	10669	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0141	10677	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0142	10683	1	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0143	10677	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0144	10678	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0145	10678	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0146	10677	1	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0147	10678	1	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0148	10680	1	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0149	10679	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0150	10678	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0151	10679	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0152	10679	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0153	10680	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0154	10681	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0155	10677	1	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0156	10681	1	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145