JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPSF2_chr14_92116969_92177145	0/0	t0157	10679	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0158	10681	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0159	10681	1	0	0	0	0	1	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0160	10684	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0161	10682	1	1	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0162	10684	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0163	10673	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0164	10678	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0165	10677	1	1	0	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0166	10679	1	0	1	0	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0167	10656	1	0	0	0	1	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF2_chr14_92116969_92177145	0/0	t0168	10679	1	0	0	1	0	0	copy fasta	CPSF2	chr14	92116969	92177145
CPSF3_chr2_9418654_9478101	1/1	t0001	205	229	86	59	40	10	32	copy fasta	CPSF3	chr2	9418654	9478101
CPSF3_chr2_9418654_9478101	0/0	t0002	205	1	0	1	0	0	0	copy fasta	CPSF3	chr2	9418654	9478101
CPSF4L_chr17_73243449_73266880	0/0	t0001	108	270	46	57	129	11	27	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4L_chr17_73243449_73266880	1/1	t0002	108	126	45	15	46	1	17	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4L_chr17_73243449_73266880	0/0	t0003	108	1	0	0	1	0	0	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4L_chr17_73243449_73266880	0/0	t0004	108	1	1	0	0	0	0	copy fasta	CPSF4L	chr17	73243449	73266880
CPSF4_chr7_99433943_99462373	1/1	t0001	1014	155	5	44	77	10	17	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0002	1014	95	70	11	7	5	2	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0003	1014	94	7	5	63	1	18	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0004	1014	5	5	0	0	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0005	1014	3	0	0	3	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0006	1014	3	1	2	0	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0007	1014	3	3	0	0	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0008	1014	1	0	1	0	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0009	1014	1	0	1	0	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0010	1014	1	1	0	0	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0011	1014	1	0	0	1	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0012	1014	1	0	0	1	0	0	copy fasta	CPSF4	chr7	99433943	99462373
CPSF4_chr7_99433943_99462373	0/0	t0013	1014	1	0	0	0	0	1	copy fasta	CPSF4	chr7	99433943	99462373
CPSF6_chr12_69234569_69279358	0/1	t0001	4933	68	15	19	24	0	9	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	1/0	t0002	4929	52	6	11	31	1	2	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0003	4938	31	0	6	17	1	7	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0004	4934	29	0	0	28	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0005	4934	17	1	8	4	2	2	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0006	4935	14	3	0	11	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0007	4928	10	0	0	10	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0008	4939	10	0	0	10	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0009	4929	9	0	0	9	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0010	4939	8	0	0	7	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0011	4930	6	0	3	1	1	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0012	4934	6	5	1	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0013	4931	5	5	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0014	4932	5	2	2	0	1	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0015	4941	5	0	0	5	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0016	4934	4	0	2	0	2	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0017	4929	4	1	3	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0018	4936	3	0	0	0	0	3	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0019	4934	3	2	1	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358