JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPSF6_chr12_69234569_69279358	0/0	t0020	4936	3	3	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0021	4937	3	3	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0022	4929	3	0	0	3	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0023	4938	3	0	2	0	1	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0024	4931	3	0	0	0	0	3	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0025	4934	3	0	1	2	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0026	4932	3	0	2	0	1	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0027	4935	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0028	4934	2	0	2	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0029	4927	2	1	1	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0030	4935	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0031	4934	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0032	4930	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0033	4934	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0034	4938	2	0	0	2	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0035	4933	2	0	2	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0036	4933	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0037	4935	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0038	4929	2	0	0	2	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0039	4933	2	0	0	2	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0040	4940	2	0	0	1	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0041	4935	2	0	0	2	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0042	4940	2	0	0	2	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0043	4942	2	2	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0044	4931	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0045	4929	1	0	0	0	1	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0046	4924	1	0	0	0	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0047	4930	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0048	4933	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0049	4932	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0050	4934	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0051	4938	1	0	0	0	1	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0052	4929	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0053	4929	1	0	0	0	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0054	4929	1	0	0	0	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0055	4935	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0056	4929	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0057	4934	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0058	4935	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0059	4934	1	0	1	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0060	4932	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0061	4931	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0062	4930	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0063	4929	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0064	4939	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0065	4935	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0066	4934	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0067	4939	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0068	4933	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0069	4933	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358