JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPSF6_chr12_69234569_69279358	0/0	t0070	4939	1	0	1	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0071	4935	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0072	4937	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0073	4937	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0074	4936	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0075	4933	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0076	4933	1	0	1	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0077	4931	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0078	4932	1	0	1	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0079	4933	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0080	4936	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0081	4937	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0082	4935	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0083	4936	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0084	4937	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0085	4938	1	0	0	0	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0086	4940	1	0	0	0	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0087	4934	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0088	4935	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0089	4933	1	0	0	0	0	1	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0090	4938	1	0	0	1	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF6_chr12_69234569_69279358	0/0	t0091	4935	1	1	0	0	0	0	copy fasta	CPSF6	chr12	69234569	69279358
CPSF7_chr11_61397729_61434975	1/1	t0001	2099	152	58	38	22	6	26	copy fasta	CPSF7	chr11	61397729	61434975
CPSF7_chr11_61397729_61434975	0/0	t0002	2098	18	16	2	0	0	0	copy fasta	CPSF7	chr11	61397729	61434975
CPSF7_chr11_61397729_61434975	0/0	t0003	2097	9	9	0	0	0	0	copy fasta	CPSF7	chr11	61397729	61434975
CPSF7_chr11_61397729_61434975	0/0	t0004	2099	5	5	0	0	0	0	copy fasta	CPSF7	chr11	61397729	61434975
CPSF7_chr11_61397729_61434975	0/0	t0005	2099	2	0	0	2	0	0	copy fasta	CPSF7	chr11	61397729	61434975
CPSF7_chr11_61397729_61434975	0/0	t0006	2099	2	0	0	2	0	0	copy fasta	CPSF7	chr11	61397729	61434975
CPSF7_chr11_61397729_61434975	0/0	t0007	2099	1	0	0	1	0	0	copy fasta	CPSF7	chr11	61397729	61434975
CPSF7_chr11_61397729_61434975	0/0	t0008	2099	1	0	0	1	0	0	copy fasta	CPSF7	chr11	61397729	61434975
CPT1A_chr11_68749883_68846916	0/0	t0001	2920	71	11	19	28	5	8	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0002	2919	40	16	7	10	3	4	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/1	t0003	2918	39	16	8	7	0	7	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0004	2921	12	0	3	6	2	1	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0005	2920	10	3	1	1	4	1	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0006	2920	5	5	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0007	2921	5	0	1	4	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0008	2919	4	1	1	2	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0009	2919	3	0	0	3	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	1/0	t0010	2917	3	1	0	1	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0011	2919	3	3	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0012	2921	3	0	0	3	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0013	2923	2	0	0	2	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0014	2919	2	2	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0015	2919	2	1	0	1	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0016	2920	2	1	1	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0017	2920	2	2	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0018	2930	2	2	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0019	2920	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0020	2920	1	0	0	0	0	1	copy fasta	CPT1A	chr11	68749883	68846916