JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPT1A_chr11_68749883_68846916	0/0	t0021	2918	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0022	2918	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0023	2920	1	0	0	1	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0024	2920	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0025	2920	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0026	2921	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0027	2919	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0028	2919	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0029	2919	1	0	1	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0030	2918	1	0	1	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0031	2920	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0032	2919	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0033	2921	1	0	1	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0034	2921	1	0	1	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0035	2919	1	0	0	1	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0036	2918	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0037	2925	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0038	2924	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0039	2926	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0040	2930	1	0	1	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0041	2933	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0042	2918	1	0	1	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0043	2920	1	1	0	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1A_chr11_68749883_68846916	0/0	t0044	2920	1	0	1	0	0	0	copy fasta	CPT1A	chr11	68749883	68846916
CPT1B_chr22_50563861_50583427	1/1	t0001	285	247	28	43	142	10	22	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	t0002	285	89	45	14	19	1	10	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	t0003	285	47	5	9	23	0	10	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	t0004	285	16	8	0	1	1	6	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	t0005	285	15	14	0	1	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1C_chr19_49686116_49718731	1/0	t0001	435	209	41	40	93	10	24	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/1	t0002	435	92	21	31	25	4	10	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	t0003	435	40	20	1	11	0	8	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	t0004	435	4	0	0	0	0	4	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	t0005	435	2	2	0	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	t0006	435	2	2	0	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	t0007	435	1	0	0	1	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT2_chr1_53191824_53219197	1/1	t0001	723	386	94	68	174	12	36	copy fasta	CPT2	chr1	53191824	53219197
CPTP_chr1_1319802_1333896	0/1	t0001	1510	208	24	42	95	12	34	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	1/0	t0002	1510	38	5	2	25	0	5	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0003	1510	29	27	2	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0004	1510	29	11	3	11	2	2	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0005	1510	24	0	14	8	2	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0006	1510	8	6	1	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0007	1510	5	4	1	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0008	1510	5	4	1	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0009	1510	4	4	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0010	1510	3	0	0	3	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0011	1511	3	0	2	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0012	1510	2	0	2	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0013	1510	2	0	0	2	0	0	copy fasta	CPTP	chr1	1319802	1333896