Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRF1_chr6_46992708_47047332	0/0	t0028	2700	1	0	0	1	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0029	2700	1	0	0	1	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0030	2700	1	0	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0031	2700	1	0	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0032	2700	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0033	2700	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0034	2700	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0035	2700	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0036	2700	1	0	0	1	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0037	2700	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0038	2700	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0039	2700	1	1	0	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0040	2700	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0041	2700	1	0	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0042	2700	1	0	0	0	0	1	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0043	2700	1	0	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF1_chr6_46992708_47047332	0/0	t0044	2700	1	0	1	0	0	0	copy fasta	ADGRF1	chr6	46992708	47047332
ADGRF3_chr2_26303175_26351789	1/1	t0001	1467	298	76	68	106	16	30	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	t0002	1467	10	7	1	2	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	t0003	1467	4	3	1	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	t0004	1467	4	0	2	0	2	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	t0005	1467	2	2	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	t0006	1467	2	0	0	2	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	t0007	1467	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF3_chr2_26303175_26351789	0/0	t0008	1467	1	1	0	0	0	0	copy fasta	ADGRF3	chr2	26303175	26351789
ADGRF4_chr6_47693580_47727014	1/1	t0001	1041	358	82	63	169	10	32	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0002	1040	17	0	12	0	4	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0003	1041	5	5	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0004	1041	2	2	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0005	1041	2	1	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0006	1041	2	1	1	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0007	1041	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0008	1041	1	0	0	1	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0009	1041	1	1	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0010	1041	1	0	0	1	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0011	1041	1	1	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0012	1041	1	1	0	0	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0013	1041	1	0	0	1	0	0	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF4_chr6_47693580_47727014	0/0	t0014	1041	1	0	0	0	0	1	copy fasta	ADGRF4	chr6	47693580	47727014
ADGRF5_chr6_46847522_46926938	0/1	t0001	1721	146	13	32	71	7	22	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0002	1721	85	14	11	47	2	11	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0003	1721	45	10	5	24	2	4	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0004	1720	32	24	5	1	0	2	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0005	1721	24	0	11	9	2	2	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0006	1721	9	8	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	1/0	t0007	1721	5	1	2	0	1	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0008	1720	4	4	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0009	1721	3	3	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0010	1720	2	1	1	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0011	1721	2	2	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938