JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPTP_chr1_1319802_1333896	0/0	t0014	1510	2	2	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0015	1510	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0016	1510	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0017	1510	1	0	0	0	0	1	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0018	1510	1	0	0	0	0	1	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0019	1510	1	0	1	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0020	1511	1	1	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0021	1510	1	1	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0022	1510	1	1	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0023	1510	1	0	0	0	0	1	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0024	1511	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0025	1510	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0026	1510	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0027	1510	1	1	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0028	1510	1	0	1	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0029	1510	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	t0030	1510	1	1	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPVL_chr7_28990235_29151537	1/1	t0001	657	225	35	42	102	10	34	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	t0002	657	50	42	5	3	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	t0003	657	2	0	0	2	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	t0004	657	1	0	0	1	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	t0005	657	1	0	1	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	t0006	657	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	t0007	657	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	t0008	657	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPXCR1_chrX_88742225_88759781	0/0	t0001	721	143	43	25	59	5	11	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/1	t0002	717	110	16	23	54	3	13	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	1/0	t0003	721	31	3	6	15	2	4	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	t0004	721	17	12	1	4	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	t0005	721	3	0	2	0	1	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	t0006	721	2	2	0	0	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	t0007	718	1	0	0	1	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	t0008	718	1	0	0	1	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXM1_chr20_2789074_2805627	1/1	t0001	172	442	90	82	202	16	50	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	t0002	172	12	10	2	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM2_chr10_123740639_123896807	1/1	t0001	1274	174	24	33	84	10	21	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0002	1274	51	33	11	0	1	6	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0003	1273	11	1	5	3	0	2	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0004	1275	10	9	1	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0005	1274	7	7	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0006	1274	6	1	0	5	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0007	1275	5	5	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0008	1273	4	0	1	0	0	3	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0009	1274	4	1	1	0	1	1	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0010	1274	3	3	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0011	1275	2	2	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0012	1273	2	0	2	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0013	1274	2	1	0	0	0	1	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0014	1274	2	2	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0015	1275	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807