JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CPXM2_chr10_123740639_123896807	0/0	t0016	1275	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0017	1274	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0018	1274	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	t0019	1274	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPZ_chr4_8587765_8624752	0/1	t0001	205	199	18	61	96	5	18	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	1/0	t0002	205	179	63	10	79	7	19	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	t0003	205	41	7	13	10	6	5	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	t0004	205	12	12	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	t0005	205	4	0	0	0	0	4	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	t0006	205	3	0	0	3	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	t0007	205	2	0	0	0	0	2	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	t0008	205	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	t0009	205	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CP_chr3_149167497_149226829	1/1	t0001	1255	280	46	52	126	13	41	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0002	1255	53	23	5	20	1	4	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0003	1256	15	12	3	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0004	1255	7	0	1	4	1	1	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0005	1256	4	4	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0006	1256	4	4	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0007	1255	4	0	2	0	0	2	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0008	1255	3	0	1	0	2	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0009	1256	2	2	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0010	1255	2	0	0	2	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0011	1255	1	0	0	0	1	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	t0012	1255	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CR1L_chr1_207640133_207728703	1/1	t0001	120	346	80	74	140	16	34	copy fasta	CR1L	chr1	207640133	207728703
CR1_chr1_207491157_207646765	1/0	t0001	2468	136	28	32	51	5	19	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/1	t0002	2468	127	39	19	54	5	9	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0003	2468	50	1	6	38	1	4	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0004	2466	10	8	2	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0005	2468	7	7	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0006	2468	5	3	2	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0007	2468	5	0	1	0	0	4	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0008	2468	3	0	0	3	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0009	2468	2	1	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0010	2468	2	0	0	2	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0011	2468	2	0	0	0	0	2	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0012	2468	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0013	2468	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0014	2468	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0015	2468	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0016	2468	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0017	2468	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0018	2468	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0019	2468	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0020	2468	1	0	0	0	1	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0021	2468	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	t0022	2468	1	0	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR2_chr1_207449328_207494892	0/1	t0001	861	285	79	38	139	7	21	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	t0002	861	58	6	11	33	1	7	copy fasta	CR2	chr1	207449328	207494892