JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CR2_chr1_207449328_207494892	1/0	t0003	861	31	9	8	11	1	1	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	t0004	861	1	0	0	1	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	t0005	861	1	0	0	0	0	1	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	t0006	861	1	0	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	t0007	861	1	0	0	0	1	0	copy fasta	CR2	chr1	207449328	207494892
CRABP1_chr15_78335353_78353225	1/1	t0001	325	456	96	73	218	18	49	copy fasta	CRABP1	chr15	78335353	78353225
CRABP1_chr15_78335353_78353225	0/0	t0002	325	3	0	2	0	0	1	copy fasta	CRABP1	chr15	78335353	78353225
CRABP1_chr15_78335353_78353225	0/0	t0003	325	1	0	1	0	0	0	copy fasta	CRABP1	chr15	78335353	78353225
CRABP2_chr1_156694606_156710583	1/1	t0001	558	344	88	54	141	16	43	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	t0002	558	56	0	10	43	0	3	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	t0003	558	18	0	12	6	0	0	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	t0004	558	10	10	0	0	0	0	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	t0005	558	4	0	0	4	0	0	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	t0006	558	1	0	0	1	0	0	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	t0007	558	1	0	0	1	0	0	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	t0008	558	1	0	1	0	0	0	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	t0009	558	1	0	1	0	0	0	copy fasta	CRABP2	chr1	156694606	156710583
CRACDL_chr2_98788846_98941225	1/0	t0001	985	306	72	63	129	7	34	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	t0002	978	5	0	3	1	1	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	t0003	985	4	4	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/1	t0004	985	1	0	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACD_chr4_56044098_56335609	0/0	t0001	3343	57	18	15	17	3	4	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/1	t0002	3342	50	8	19	4	4	14	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0003	3342	47	14	14	15	1	3	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0004	3342	26	2	1	17	0	6	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0005	3343	17	3	3	8	2	1	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0006	3341	11	10	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0007	3342	4	4	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	1/0	t0008	3343	3	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0009	3343	3	3	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0010	3343	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0011	3343	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0012	3343	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0013	3341	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0014	3342	2	0	0	2	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0015	3343	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0016	3342	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0017	3342	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0018	3343	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0019	3343	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0020	3343	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0021	3343	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0022	3342	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0023	3343	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0024	3343	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0025	3343	1	0	0	0	0	1	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0026	3342	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0027	3342	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0028	3343	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0029	3343	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609