JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRACD_chr4_56044098_56335609	0/0	t0030	3342	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0031	3343	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0032	3343	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0033	3343	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0034	3342	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0035	3342	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	t0036	3342	1	0	0	0	0	1	copy fasta	CRACD	chr4	56044098	56335609
CRACR2A_chr12_3610328_3758109	1/1	t0001	509	264	63	48	112	6	33	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	t0002	509	28	19	6	0	0	3	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	t0003	509	20	3	2	12	2	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	t0004	509	3	0	2	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	t0005	509	3	0	3	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	t0006	509	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	t0007	509	1	0	1	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2B_chr11_822919_836986	0/0	t0001	967	127	24	50	43	8	2	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0002	967	85	11	14	47	3	10	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0003	965	53	11	1	39	0	2	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0004	965	38	21	5	9	0	3	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/1	t0005	967	30	4	4	11	0	10	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0006	967	25	7	4	3	4	7	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0007	965	15	0	0	13	0	2	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0008	967	13	0	0	11	1	1	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	1/0	t0009	967	12	1	3	2	1	4	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0010	965	11	0	0	11	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0011	967	10	1	2	3	0	4	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0012	967	3	2	0	0	1	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0013	967	3	0	0	3	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0014	967	3	0	0	3	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0015	965	2	2	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0016	967	2	0	0	2	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0017	967	2	1	1	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0018	967	2	2	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0019	965	2	1	1	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0020	967	2	0	0	0	0	2	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0021	967	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0022	967	1	0	1	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0023	967	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0024	965	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0025	965	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0026	967	1	0	0	0	0	1	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0027	965	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	t0028	965	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRADD_chr12_93672375_93855756	1/1	t0001	590	239	76	49	82	2	28	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	t0002	590	3	2	1	0	0	0	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	t0003	590	3	0	0	2	0	1	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	t0004	590	1	0	0	0	0	1	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	t0005	590	1	0	0	1	0	0	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	t0006	590	1	0	0	1	0	0	copy fasta	CRADD	chr12	93672375	93855756
CRAMP1_chr16_1607360_1682908	0/1	t0001	4162	123	19	30	60	1	12	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	1/0	t0002	4162	80	28	7	35	1	8	copy fasta	CRAMP1	chr16	1607360	1682908