JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRAMP1_chr16_1607360_1682908	0/0	t0003	4159	28	6	3	11	2	6	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0004	4161	24	0	6	16	1	1	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0005	4175	9	9	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0006	4162	7	6	1	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0007	4162	6	0	0	6	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0008	4159	6	0	0	6	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0009	4162	5	0	0	5	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0010	4162	4	0	0	4	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0011	4162	4	0	0	4	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0012	4161	3	3	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0013	4159	3	3	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0014	4162	2	2	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0015	4161	2	2	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0016	4162	2	2	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0017	4162	2	0	0	2	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0018	4162	2	0	0	2	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0019	4162	2	0	2	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0020	4159	2	0	2	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0021	4161	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0022	4159	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0023	4162	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0024	4162	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0025	4162	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0026	4162	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0027	4162	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0028	4162	1	0	0	0	1	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0029	4162	1	0	0	0	0	1	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0030	4161	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0031	4159	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0032	4159	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0033	4162	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0034	4162	1	0	1	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0035	4162	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	t0036	4161	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAT_chr9_129089794_129115793	0/0	t0001	888	211	27	38	110	10	26	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/1	t0002	882	175	47	28	73	6	20	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0003	888	16	15	1	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0004	888	6	5	0	1	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0005	882	2	2	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0006	882	2	0	0	2	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0007	882	2	1	0	1	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	1/0	t0008	888	2	1	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0009	882	1	0	1	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0010	882	1	0	0	1	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0011	888	1	1	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	t0012	888	1	1	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRB1_chr1_197263252_197483455	1/1	t0001	738	181	68	33	55	4	19	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	t0002	738	2	1	0	0	0	1	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	t0003	738	2	0	1	1	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	t0004	738	1	1	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455