JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRB2_chr9_123351197_123383753	0/1	t0001	1749	214	44	50	85	11	23	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	1/0	t0002	1756	129	35	18	57	4	14	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0003	1749	29	0	5	22	0	2	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0004	1749	9	0	0	9	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0005	1756	6	6	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0006	1756	4	0	0	4	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0007	1746	4	4	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0008	1749	4	3	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0009	1756	3	0	0	3	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0010	1756	3	0	0	3	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0011	1749	3	0	2	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0012	1756	2	0	0	2	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0013	1756	2	2	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0014	1749	2	0	0	0	1	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0015	1749	2	0	2	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0016	1749	2	2	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0017	1749	2	0	0	2	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0018	1756	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0019	1756	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0020	1714	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0021	1749	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0022	1749	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0023	1749	1	0	0	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0024	1749	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0025	1749	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0026	1749	1	0	0	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0027	1749	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0028	1749	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	t0029	1749	1	0	0	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB3_chr19_6459271_6472221	1/1	t0001	724	328	71	67	136	17	35	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/0	t0002	724	52	17	1	21	1	12	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/0	t0003	724	7	7	0	0	0	0	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/0	t0004	724	1	0	0	0	0	1	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/0	t0005	724	1	1	0	0	0	0	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/0	t0006	724	1	0	0	1	0	0	copy fasta	CRB3	chr19	6459271	6472221
CRBN_chr3_3145011_3184691	0/0	t0001	858	135	8	13	96	2	16	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/1	t0002	863	107	32	29	27	5	13	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0003	859	45	11	14	11	2	7	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	1/0	t0004	859	28	26	1	0	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0005	863	19	5	2	9	1	2	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0006	860	10	1	6	0	0	3	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0007	858	8	0	0	8	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0008	854	7	0	1	6	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0009	858	4	2	2	0	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0010	858	4	3	0	0	1	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0011	863	2	0	0	0	0	2	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0012	891	2	2	0	0	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0013	858	2	2	0	0	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0014	872	1	0	0	0	0	1	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	t0015	859	1	0	0	0	1	0	copy fasta	CRBN	chr3	3145011	3184691