JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CRBN_chr3_3145011_3184691	0/0	t0016	858	1	0	0	1	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRCP_chr7_66109847_66159568	0/0	t0001	2327	105	42	20	24	6	13	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	1/1	t0002	2328	48	23	10	2	4	7	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0003	2326	47	1	12	29	3	2	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0004	2328	46	4	2	38	1	1	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0005	2328	34	2	9	14	0	9	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0006	2329	25	0	2	23	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0007	2327	24	0	5	17	2	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0008	2328	18	0	7	10	0	1	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0009	2329	4	0	0	4	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0010	2328	3	3	0	0	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0011	2328	3	0	0	3	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0012	2328	2	0	0	2	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0013	2328	2	2	0	0	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0014	2326	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0015	2327	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0016	2327	1	1	0	0	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0017	2326	1	1	0	0	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0018	2326	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0019	2328	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0020	2328	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0021	2327	1	0	1	0	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0022	2327	1	1	0	0	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0023	2329	1	1	0	0	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0024	2327	1	0	0	0	0	1	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0025	2314	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0026	2329	1	1	0	0	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0027	2327	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0028	2328	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0029	2327	1	0	0	0	0	1	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0030	2328	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0031	2327	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	t0032	2328	1	0	0	0	0	1	copy fasta	CRCP	chr7	66109847	66159568
CRCT1_chr1_152509482_152521008	0/0	t0001	419	234	33	54	114	10	23	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	1/1	t0002	419	158	36	25	71	6	18	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0003	419	19	18	1	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0004	419	6	0	0	6	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0005	419	5	5	0	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0006	419	4	4	0	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0007	419	2	2	0	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0008	419	1	0	0	1	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0009	419	1	0	0	1	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0010	419	1	0	0	1	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	t0011	419	1	0	0	0	0	1	copy fasta	CRCT1	chr1	152509482	152521008
CREB1_chr2_207524962_207610988	0/0	t0001	9101	57	1	13	31	3	9	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0002	9097	45	7	1	34	0	3	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0003	9097	39	3	12	12	2	10	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0004	9099	20	5	5	5	1	4	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0005	9110	9	2	5	0	0	2	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0006	9112	9	0	5	0	0	4	copy fasta	CREB1	chr2	207524962	207610988