JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREB1_chr2_207524962_207610988	0/0	t0007	9097	9	8	1	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0008	9091	8	8	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0009	9112	6	5	1	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0010	9094	6	6	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0011	9092	6	6	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0012	9105	5	5	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	1/0	t0013	9112	4	3	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0014	9095	4	0	2	0	2	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0015	9099	4	4	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0016	9101	4	0	0	0	0	4	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0017	9103	4	0	1	1	0	2	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0018	9096	4	4	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0019	9100	4	0	0	4	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0020	9101	4	0	4	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0021	9097	4	0	4	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0022	9104	3	3	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0023	9097	3	3	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0024	9094	3	3	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0025	9099	3	1	2	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0026	9099	2	0	0	2	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0027	9097	2	0	1	0	1	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0028	9103	2	0	0	0	2	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0029	9097	2	0	2	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0030	9103	1	0	0	1	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0031	9097	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0032	9099	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0033	9106	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0034	9110	1	0	0	0	1	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0035	9114	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/1	t0036	9114	1	0	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0037	9097	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0038	9097	1	0	0	1	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0039	9097	1	0	0	0	0	1	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0040	9097	1	0	0	0	1	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0041	9097	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0042	9097	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0043	9099	1	0	0	0	0	1	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0044	9101	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0045	9097	1	0	0	1	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0046	9097	1	0	1	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0047	9097	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0048	9097	1	0	0	0	1	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0049	9097	1	0	0	0	1	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0050	9097	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0051	9094	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0052	9099	1	0	0	1	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0053	9096	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0054	9101	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0055	9101	1	0	0	1	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0056	9101	1	0	0	0	1	0	copy fasta	CREB1	chr2	207524962	207610988