JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREB1_chr2_207524962_207610988	0/0	t0057	9105	1	0	0	1	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0058	9098	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0059	9103	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0060	9098	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0061	9093	1	1	0	0	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB1_chr2_207524962_207610988	0/0	t0062	9103	1	0	0	1	0	0	copy fasta	CREB1	chr2	207524962	207610988
CREB3L1_chr11_46272662_46326409	1/1	t0001	1114	117	7	30	55	10	13	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0002	1114	77	24	12	27	3	11	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0003	1114	64	29	8	18	2	7	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0004	1114	11	11	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0005	1113	7	0	2	2	1	2	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0006	1115	7	7	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0007	1115	4	4	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0008	1114	3	3	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0009	1114	2	2	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0010	1114	2	2	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0011	1114	1	0	0	1	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0012	1114	1	0	1	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0013	1114	1	0	0	1	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0014	1114	1	0	0	0	0	1	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0015	1114	1	1	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0016	1114	1	0	1	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0017	1114	1	1	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0018	1114	1	0	0	0	0	1	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0019	1114	1	1	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	t0020	1114	1	0	0	0	0	1	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L2_chr7_137869979_138007086	0/0	t0001	5876	77	5	31	22	7	12	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0002	5876	23	0	8	15	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/1	t0003	5878	23	1	0	21	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	1/0	t0004	5879	20	1	6	9	1	2	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0005	5870	16	3	4	6	0	3	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0006	5878	8	0	1	7	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0007	5877	8	5	2	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0008	5881	6	6	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0009	5872	5	4	0	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0010	5879	5	5	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0011	5870	5	0	0	5	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0012	5874	5	2	0	3	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0013	5870	4	4	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0014	5881	4	0	3	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0015	5872	3	3	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0016	5868	3	3	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0017	5879	3	3	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0018	5882	3	3	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0019	5885	3	3	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0020	5870	3	3	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0021	5872	2	1	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0022	5880	2	2	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0023	5870	2	2	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0024	5876	2	2	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086