JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREB3L2_chr7_137869979_138007086	0/0	t0025	5878	2	2	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0026	5879	2	1	1	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0027	5880	2	0	0	2	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0028	5879	2	2	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0029	5883	2	0	1	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0030	5876	2	2	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0031	5876	2	2	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0032	5876	2	2	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0033	5876	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0034	5879	1	0	0	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0035	5880	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0036	5870	1	0	0	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0037	5871	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0038	5870	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0039	5878	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0040	5877	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0041	5872	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0042	5872	1	0	0	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0043	5885	1	0	1	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0044	5883	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0045	5879	1	0	0	0	1	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0046	5877	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0047	5874	1	0	0	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0048	5883	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0049	5878	1	0	0	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0050	5879	1	0	0	0	1	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0051	5876	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0052	5876	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0053	5874	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0054	5876	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0055	5882	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0056	5879	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0057	5878	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0058	5872	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0059	5883	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0060	5879	1	0	1	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0061	5876	1	0	1	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0062	5879	1	0	0	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0063	5874	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0064	5874	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0065	5869	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0066	5876	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0067	5878	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0068	5877	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	t0069	5872	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L3_chr19_4148631_4178054	0/1	t0001	1203	200	70	44	60	6	19	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0002	1203	66	4	14	40	0	8	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0003	1199	35	0	0	30	0	5	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0004	1237	34	1	12	11	3	7	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	1/0	t0005	1203	27	2	8	7	3	6	copy fasta	CREB3L3	chr19	4148631	4178054