Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADGRF5_chr6_46847522_46926938	0/0	t0012	1721	2	2	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0013	1720	2	2	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0014	1771	2	2	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0015	1721	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0016	1721	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0017	1720	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0018	1721	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0019	1687	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0020	1721	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0021	1721	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0022	1721	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0023	1721	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0024	1721	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0025	1721	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0026	1721	1	0	0	0	0	1	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0027	1721	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0028	1721	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0029	1720	1	1	0	0	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0030	1721	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0031	1721	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0032	1721	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRF5_chr6_46847522_46926938	0/0	t0033	1721	1	0	0	1	0	0	copy fasta	ADGRF5	chr6	46847522	46926938
ADGRG1_chr16_57623630_57670567	0/1	t0001	2194	198	19	44	101	7	26	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0002	2194	36	2	6	20	6	2	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0003	2194	31	1	4	25	0	1	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0004	2195	29	18	9	0	0	2	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	1/0	t0005	2194	28	1	9	5	4	8	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0006	2194	22	0	0	18	0	4	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0007	2194	14	14	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0008	2194	10	0	3	4	0	3	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0009	2194	8	8	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0010	2194	7	7	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0011	2194	7	0	0	7	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0012	2194	5	5	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0013	2194	5	5	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0014	2194	4	2	1	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0015	2194	4	0	0	4	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0016	2194	3	2	1	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0017	2194	3	3	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0018	2194	3	0	2	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0019	2194	2	2	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0020	2195	2	0	0	2	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0021	2195	2	2	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0022	2194	2	0	1	0	0	1	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0023	2194	2	0	0	2	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0024	2194	2	2	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0025	2194	1	0	0	1	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0026	2194	1	0	0	0	1	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0027	2194	1	1	0	0	0	0	copy fasta	ADGRG1	chr16	57623630	57670567
ADGRG1_chr16_57623630_57670567	0/0	t0028	2195	1	0	0	0	0	1	copy fasta	ADGRG1	chr16	57623630	57670567