JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREB3L3_chr19_4148631_4178054	0/0	t0006	1203	13	13	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0007	1203	7	0	0	7	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0008	1203	4	0	2	0	0	2	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0009	1203	3	3	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0010	1201	3	3	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0011	1199	3	0	0	3	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0012	1173	1	0	1	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0013	1236	1	0	1	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0014	1203	1	1	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0015	1203	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0016	1246	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0017	1203	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0018	1199	1	1	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0019	1203	1	0	0	0	0	1	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	t0020	1203	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L4_chr1_153962902_153979359	1/1	t0001	562	390	80	68	182	12	46	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	t0002	562	2	2	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	t0003	562	1	1	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	t0004	562	1	1	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3_chr9_35727666_35741999	1/1	t0001	381	422	85	68	214	14	39	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	t0002	381	9	7	2	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	t0003	381	2	2	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	t0004	381	1	1	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	t0005	381	1	1	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	t0006	381	1	0	0	0	0	1	copy fasta	CREB3	chr9	35727666	35741999
CREB5_chr7_28407518_28830894	1/0	t0001	7013	28	1	7	12	1	6	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0002	7015	26	15	8	0	0	3	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0003	7017	24	0	10	3	3	8	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0004	7017	13	1	5	7	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0005	7022	12	9	0	0	3	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0006	7018	9	3	3	0	0	3	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0007	7015	8	0	2	4	1	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0008	7019	7	0	3	4	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0009	7024	4	3	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0010	7020	4	2	2	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0011	7023	4	2	0	0	1	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0012	7008	4	4	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0013	7021	4	2	0	1	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0014	7017	3	0	1	1	1	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0015	7015	3	3	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0016	7015	2	1	0	1	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0017	7013	2	0	1	1	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0018	7013	2	0	1	1	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0019	7020	2	2	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0020	7016	2	1	0	1	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0021	7019	2	1	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0022	7017	2	0	0	2	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0023	7013	1	0	0	1	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/1	t0024	7013	1	0	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0025	7022	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894