JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CREB5_chr7_28407518_28830894	0/0	t0026	7022	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0027	7018	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0028	7027	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0029	7023	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0030	7025	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0031	7019	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0032	7017	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0033	7017	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0034	7017	1	0	0	1	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0035	7015	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0036	7013	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0037	7019	1	0	0	1	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0038	7017	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0039	7015	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0040	7015	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0041	7015	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0042	7015	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0043	7018	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0044	7023	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0045	7016	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0046	7014	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0047	7019	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0048	7017	1	0	0	1	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0049	7015	1	0	1	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0050	7013	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0051	7019	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0052	7017	1	0	0	0	0	1	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	t0053	7022	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREBBP_chr16_3720054_3885713	0/0	t0001	3449	122	28	25	56	3	10	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0002	3449	39	3	4	27	2	3	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0003	3450	15	0	1	9	0	5	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0004	3449	9	9	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0005	3450	8	0	3	4	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0006	3461	7	7	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0007	3449	5	3	2	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0008	3450	5	0	1	3	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0009	3450	4	3	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0010	3450	4	1	0	2	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0011	3450	4	4	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0012	3450	4	0	0	2	0	2	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0013	3447	3	0	0	3	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0014	3450	3	0	0	3	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0015	3449	3	0	0	3	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0016	3453	3	0	0	3	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0017	3448	2	1	1	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0018	3448	2	2	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0019	3452	2	0	0	1	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0020	3450	2	0	0	0	0	2	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0021	3449	2	0	1	1	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	t0022	3449	2	0	1	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713